Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1667 ATGGCTGCCAAAATGTTGTATGATTCTATTCTTGCTAGGAGCTTTAGCAAGCATGAGCAAAAGAAGTTGGGTTATGGAGCTTTGTTTAGTTGCTTATTGACTGCATTTAGCTTCTGCATTTTGCTTAAACCTCACTTGGGTGTCCCTCTTCAAGTTTTGAATCTGAGGATCCTTACTAAAGGTTCAAGCATCAAAATGGTGATGATCAATAATGGAATGGAAATCAATACTCAAGAATTACATGAAGTTGCTGACATTGTTACAAAGAAGGCAAAACCAATATGCAGTTTGATGGATAGGACAGACTTCTGTGACATTGATAAGAATGTTAGAATCCATGGAGAATCTTCCTCAGTATTTTTTGCTTCAACTGACAGGAATGTTATCTCAGAAGGCAAAACCACTTGGAAAATCAAACCTTATGCTAGAAAAGATGATGAAATAGCAATGAGTAAAACAAGAGAATGGTCTATAAAAGCAGTAAAAAACCCCCAAAAATTGCCTCAGTGCACAAAAAACCATAGTGTTCCAGCCATCCTCTTCTCCAATGGAGGATATGCAGGAAACCATTTCCATGATTTCACAGATGTGATCATTCCATTGTTCATAACAGCAAGAAAATTCAATGGAGAGGTCCAATTTCTCATAACTGATAAAGAATCTTGGTGGGTTTTCAAGTATAAAGCAATTCTATCAAAGCTATCAAGCTATGATATCATTTCCATTGACAAGGAGACACAAATTCATTGCTTTCCTCAAGCCATTGTTGGTCTTAAACGTGACCCAAATGAGCTTAGAATCAACCCAAAAAAGCATTCATACTCCATGAAAGATTTCAAGGAGTTTTTGAGAAGTTCTTACTCATTAAAGAGAGCCATAGCAATTGAAAACAAAGGCGGAAGAGGAAGGAAGAAGAAGCAAAAGCCAAAGCTTCTCATAGTTACAAGAAGCAAATCAAGGTCTTTTACAAACACAGTGGAGATCAGCAAAATGGCCAAGAAGTTAGGTTTCAAAGTGCTTGTTGTAGAACCAGATATAAACTTAAAGAAAGTTGCTGAAATTGTGAATTCTTGTGATGTGATGATGGGAGTTCATGGGGCTGGACTTACAAACATTGTGTTTCTTCCTGAAAAAGCAGTTTTTATTCAGATTGTTCCATTTGGAGGGGGAGATTGGGTTTCATCAAACTTCTTTGGAGAGCCTTCAAAGGATATGAATTTGAAGTATTTGGAGTACAAGATGAGTTTAGAAGAAAGCACATTGATTCAACAATACCCAAAAGAAGATGTGGTTTTGAGAGATCCTAAGACAATTGAAAAACAGGGTTGGAGTACTTTCAAGTCAATCTATTTTGATAACCAAAATGTGAATCTTGATATCAATAGATTTAGGCCCACTTTGTTGAAAGCTCTTGAGCTTCTGCACCAGTAG 1431 36.76 MAAKMLYDSILARSFSKHEQKKLGYGALFSCLLTAFSFCILLKPHLGVPLQVLNLRILTKGSSIKMVMINNGMEINTQELHEVADIVTKKAKPICSLMDRTDFCDIDKNVRIHGESSSVFFASTDRNVISEGKTTWKIKPYARKDDEIAMSKTREWSIKAVKNPQKLPQCTKNHSVPAILFSNGGYAGNHFHDFTDVIIPLFITARKFNGEVQFLITDKESWWVFKYKAILSKLSSYDIISIDKETQIHCFPQAIVGLKRDPNELRINPKKHSYSMKDFKEFLRSSYSLKRAIAIENKGGRGRKKKQKPKLLIVTRSKSRSFTNTVEISKMAKKLGFKVLVVEPDINLKKVAEIVNSCDVMMGVHGAGLTNIVFLPEKAVFIQIVPFGGGDWVSSNFFGEPSKDMNLKYLEYKMSLEESTLIQQYPKEDVVLRDPKTIEKQGWSTFKSIYFDNQNVNLDINRFRPTLLKALELLHQ 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29431402 29434098 + CcPI632755_01g016670.1 Cco01g1667 170529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1667 476 Pfam Glycosyltransferase 61 282 382 IPR049625 GO:0016757(InterPro)
Cco01g1667 476 PANTHER GLYCOSYLTRANSFERASE 93 472 IPR007657 GO:0016757(InterPro)|GO:0016757(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1667 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1667 Cco-Chr1:29431402 Cco10g0485 Cco-Chr10:5784967 5.40E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g257 Blo04g00836 . . . . . . . Cmo13g01040 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0745 . . Cone19ag0320 Lsi02g00218 . . . . . . . . Bpe15g00535 Bma03g00903 . Sed01g1752 . . Cma13g01004 . Car13g00839 . . . Bhi08g01270 Tan05g2217 Cmetu08g1322 Lac10g0272 Hepe07g2367 . . Cla04g01063 Cam04g1106 Cec01g1620 Cco01g1667 Clacu04g1131 Cmu04g1115 Cre01g1416 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012738 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 3 0 1 0 0 1 1 1 1 2 1 2 1 28