Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1668 ATGGCAGCTCCCGCTGTATCTCAGCCCCGATCCTCTAAAACCGAGTCCTACGTTGATAACAAGCGCAAGGAGGACATTCGACAGGCCAATATCATAGCAGCCCGATCCATCGCCGATGCTGTTCGTACTAGTCTTGGCCCCAAGGGCATGGACAAGATGATCTCTACGGCCTCTGGTGAGGTCATCATTACTAATGATGGCGCGACCATTCTCAATAAAATGGAAGTTCTCCAACCTGCTGCCAAAATGCTCGTCGAGCTCTCGAAGTCGCAGGACTCTGCTGCTGGAGATGGTACGACTACCGTGGTCGTCATTGCAGGTTCACTTCTTAAACAGTGTCTTTCTCTTTTGTCCCATGGGATTCACCCCACCGTAATCTCTGATTCCCTCCACAAAACCGCCATTAAGGCTGTTGATGTGTTGACAGCAATGGCTGTCCCGGTTGAGCTTTCGGATAGGGAGTCGTTGATTAAGTCGGCGAGTACTTCGCTTAATAGTAAGGTTGTCAGTCAGTACTCGACCTTGCTTGCGCCGCTTGCTGTCGATTCTGTGCTTTCGGTCGTTGATCCTGCTAAGCCAGATTTGGTTGATTTGAGGGATATTAAGATTGTGAAGAAGCTGGGCGGGACCGTGGATGACACTGTGCTTGTCAAGGGTTTGGTGTTTGACAAAAAGGTAAGTCATGCGGCTGGCGGACCGACCAGAATGGAGAATGCGAAGATTGCAGTAATTCAATTCCAGATTTCACCACCTAAAACTGACATTGAGCAGAGTATTGTGGTCTCGGATTATACTCAGATGGATAGGATATTGAAAGAGGAGAGGAATTACATTTTAGGTATGATTAAGAAGATTAGGGCAACTGGGTGTAACGTATTGTTGATTCAGAAGAGTATCTTGAGAGATGCAGTGACAGATTTGTCACTACATTACCTTGCTAAAGCTAAGATTTTGGTGATTAAGGATGTTGAGCGCGATGACATTGAATTCATTACGAAGACTCTCAATTGTCTGCCAATTGCAAATATTGAACATTTCCGCGCTGAGAAGTTGGGGTATGCAGAACTCGTTGAGGAGGCTTCAATGGGAGACGGGAAGATTGTTAGGATTACGGGCATTAAGGATATGGGGCGGACCGCTACTGTACTGGTTCGAGGGTCTAACCAACTAGTGATTGATGAGGCTGAGCGGAGCTTGCATGATGCCCTGTGTGTTGTTAGGTGTTTGGTAAATAAAAGGTTCTTGATTGCAGGCGGTGGTGCACCAGAGATTGAGCTGTCAAGGCAGCTAGGTGCCTGGGCAAAAGTGTTGCATGGAATGGAGGGTTACTGTGTTCGTTCCTTTGCGGAGGCTCTTGAAGTTATCCCATATACATTGGCTGAAAATGCTGGGTTGAACCCAATCACCATTGTTACAGAACTGAGGAATCGCCATGCACAGGGTGAGATCAATACTGGAATTAATGTAAGGAAGGGGCAGATCACAAACATCTTGGAGGAGAATGTTGTTCAGCCACTTCTTGTAAGTACAAGTGCAATCACTCTAGCAACAGAATGCGTTCGAATGATTTTGAAGATTGATGACATTGTCACAGTGAGGTAG 1602 46.63 MAAPAVSQPRSSKTESYVDNKRKEDIRQANIIAARSIADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGSLLKQCLSLLSHGIHPTVISDSLHKTAIKAVDVLTAMAVPVELSDRESLIKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPAKPDLVDLRDIKIVKKLGGTVDDTVLVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIRATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDDIEFITKTLNCLPIANIEHFRAEKLGYAELVEEASMGDGKIVRITGIKDMGRTATVLVRGSNQLVIDEAERSLHDALCVVRCLVNKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRSFAEALEVIPYTLAENAGLNPITIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29437352 29438953 + CcPI632755_01g016680.1 Cco01g1668 170530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1668 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 91 110 IPR017998 GO:0140662(InterPro)
Cco01g1668 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 381 403 IPR017998 GO:0140662(InterPro)
Cco01g1668 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 61 79 IPR017998 GO:0140662(InterPro)
Cco01g1668 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 415 427 IPR017998 GO:0140662(InterPro)
Cco01g1668 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 39 55 IPR017998 GO:0140662(InterPro)
Cco01g1668 533 SUPERFAMILY GroEL apical domain-like 213 386 IPR027409 -
Cco01g1668 533 ProSitePatterns Chaperonins TCP-1 signature 3. 91 99 IPR002194 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)
Cco01g1668 533 NCBIfam T-complex protein 1 subunit delta 19 532 IPR012717 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)
Cco01g1668 533 CDD TCP1_delta 19 532 IPR012717 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)
Cco01g1668 533 ProSitePatterns Chaperonins TCP-1 signature 1. 42 54 IPR002194 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)
Cco01g1668 533 Gene3D GroEL 218 377 IPR027409 -
Cco01g1668 533 NCBIfam thermosome subunit alpha 21 531 IPR054827 -
Cco01g1668 533 SUPERFAMILY GroEL-intermediate domain like 152 412 IPR027410 -
Cco01g1668 533 NCBIfam thermosome subunit beta 22 531 IPR053374 -
Cco01g1668 533 FunFam T-complex protein 1 subunit delta 218 376 - -
Cco01g1668 533 Gene3D - 147 413 IPR027410 -
Cco01g1668 533 Pfam TCP-1/cpn60 chaperonin family 37 531 IPR002423 GO:0005524(InterPro)
Cco01g1668 533 MobiDBLite consensus disorder prediction 1 20 - -
Cco01g1668 533 Gene3D - 34 530 IPR027413 -
Cco01g1668 533 PANTHER CHAPERONIN 20 532 IPR017998 GO:0005832(PANTHER)|GO:0006457(PANTHER)|GO:0051082(PANTHER)|GO:0140662(InterPro)
Cco01g1668 533 SUPERFAMILY GroEL equatorial domain-like 20 531 IPR027413 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1668 K09496 - - csv:101217571 1009.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1668 Cco-Chr1:29437352 Cco08g1927 Cco-Chr8:30207036 2.80E-82 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g262 Blo04g00835 Blo16g00127 . . . Bpe13g00366 Bma06g00054 . Cmo13g01041 . . . . . . Cpe20g00139 . . . . . . . . . . . . . . . . . . . Lsi02g00217 Csa01g00699 Chy12g01413 Cme12g01847 . . Bda11g01779 . . Bpe15g00534 . . Sed02g0902 . . . Cma18g00056 . . Cpe09g01125 . Bhi08g01269 Tan05g2218 Cmetu05g1284 Lac10g0271 Hepe07g2368 . . Cla04g01064 Cam04g1107 Cec01g1621 Cco01g1668 Clacu04g1132 Cmu04g1116 Cre01g1417 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008900 2 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 2 34