Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1682 ATGAGAACCCATCTCACATTGACTTACTTTCTAAGCTCCAGTATCAGCAAAATCATCTTCATCGCCTTCATCTACTTCCATTTTGCTCCATGTTTCACCCAAGACACCCTCCATGAATTTAAAGCATGTGGTGTGAAGAATTACTACAATGGCAGAGCCTTGGCAAACATCTCCTATCCCAAAATTGGCAGGAGGCCGAAATTGGATTACACTATTGGAATGAATTCATTGGAATATAACGTTCTGAAAATCAACCAGTCGGATCATCGAGTGATGATCATGAAAGAAGACCACTTTGATCATTTTAGCGCACTAAATAAAATGGAAACAGCAACTCTGGATTACCATATGTTTATTTATTCTTCCGACGACCGAAACATCTCTGTCTGGTACGATTGTCCCCAAGAAGACATAAATTGGGAGAATTACAGATTTCCTTGCGGCTCAAAACAGGGAAAACAGGGGAGAACCAGCTATGTTTTTGAAACAAGTGGCCAAATTGGAGGATGTAAAATGAAAATGGAAGTGGCAGTTATGATAAACGGGTCGGAAGGTGGAATGAACAAAACGAGGCCGGCTTTGGTGGTGGGGAAAGGTAGGAGACGATGGTTCAGCTTCGGATACAAGAATCTGTATGTAATACAAGGCTTGGAAGGTAGAAAGAATGTAATGGCTCTGTTAGGGAAGGCTGGGAGACTTGAATTCACCGTGCCCTACATGGAGCAAACTAACCAGGACAGGAAAGAAGGCAGAAAGAACCTGATGAATTCATTGGAAAAGGCTACAAGACGTAGGTTCAACAACATATTCCAGAGACTACAAGCGATGGAGGGATTGAAAGAAGGTGGAAAGAACAAACTGGGTCTGCAGGAGAAGGCTAGATGGTTCGATTTCATATACAAGAAGACCAGAAATTATAGAAGGGATGAAATAGAGGGATTAAAGTTGGAAGGTAGAAAGAATAGAATGAGTCTGTTGGAGAAGCCAGCAAATAGGACGAAACAAGAGTTGGAAGTTGAATACAAGAATCTATATACGATAGCATGTGATGCATGTAGAGAAAGCCATGGAAAGTGTGGAGAAAATGCAACGTACCAATTCTACTGCATTTGTGAAACCCAAGATCAGCATCGTCCTTACATCTGCATAGCTTCTCCTCGACCTGGAAAGTCAAATTTACTCAAGAAAATATTTATCATAGTTGCAATTGCTTCAGGAAGCATCATTTTAACAATCTCCATCATCATCTTCATATACTCCACAAGGAAACACATCTCAGACGACAAGAAAATTGAGGAAATGATAAGGAGATATTCCACGCACACACCGAAGCGGTATAGTTACTCACAGCTAAAGAAAATCACAAATTCCTTCACAAACAAGCTTGGCCAAGGAGGATTTAGCACCGTCTACAAAGGAAAATTACGAGATGGTTGCGACGTGGCAGTGAAACTCTTGAATGAATCAAAAGAAAACGGCGAAGAGTTTATGAATGAAGTTGTTAGCATCACCAAAACATCGCATGTAAACATAGCCACCCTCTTGGGATTTTGCTATGAACGAAGTACAAGGGCTTTAGTTTATGAATATATGTCTAATGGGTCATTGGACAAGTATATATTTCAAAGAGGGCTACAGATCAAAAATGGTGTGGAGTTGAGTTTGAGCACACTCTATGGCATTGTTATTGGTGTGGGTCGAGGCTTAGAGTATTTGCATTGCCACTGCAACACAAAGATCTTGCATTTTGACATCAAACCAGACAACATTCTTTTGGACAATAATTTCTGCCCCAAGATCTCAGACTTTGGACTTGCAAAGCAATGCATGGCCAGAGAGAGTCATGTGTCAATGACAGGTATGAAAGGGACGGTAGGATTCATGGCACCTGAAGTAATATTTAGAAATCTTGGCAAAGTTTCCCACAAGTCTGATGTTTATAGTTATGGAATGTTGGTTCTTGAGATGTTGGGTGAAAAGAAGTGTCCAAATGAAAGAGTGGGGCAGAGCAGTGAAGGGTACTTTCCTGATTGGATATATAACAATCTTACACGACATGAAATAGATGAAGGTTCTAATTGCTGGGGCAACACAGAAGAGGAAAAACAAATGGCAAGAAAAATGATAATTGTGGGGTTGCATTGCATTCAGACTTCGCCCCATCACAGGCCGTCGATGACCCATGTGGTTGCAATGTTAGAAGGCAGTATTGATAGCTTACAAATTCCGCCAAAACCCAATGTGCCTGAGGCCACCCGTGTTGCAACTGCTCCACAAGGAACTCCTGGCTATGTCGATGCGAAGTATTACGAATGTTGTCAACTTACAAATAAAAGCGACGTCTTTAGCTTTGGAGTAGTTTTGTTGTCTTTTTCTACAACTGGGCTTCTCTTCCTCCCAATTATAGCTACCAAATTGATTGTTGTAGCACAAGCAAACTCCATTTCATTTGCTGGTTTCAATGATGAATCTTTGGGGATCATGAACTTCTCTTACAATTCTTGTCAATCCTCGGTTGGGTGCCTGTGCACACTTGAGTAA 2541 41.13 MRTHLTLTYFLSSSISKIIFIAFIYFHFAPCFTQDTLHEFKACGVKNYYNGRALANISYPKIGRRPKLDYTIGMNSLEYNVLKINQSDHRVMIMKEDHFDHFSALNKMETATLDYHMFIYSSDDRNISVWYDCPQEDINWENYRFPCGSKQGKQGRTSYVFETSGQIGGCKMKMEVAVMINGSEGGMNKTRPALVVGKGRRRWFSFGYKNLYVIQGLEGRKNVMALLGKAGRLEFTVPYMEQTNQDRKEGRKNLMNSLEKATRRRFNNIFQRLQAMEGLKEGGKNKLGLQEKARWFDFIYKKTRNYRRDEIEGLKLEGRKNRMSLLEKPANRTKQELEVEYKNLYTIACDACRESHGKCGENATYQFYCICETQDQHRPYICIASPRPGKSNLLKKIFIIVAIASGSIILTISIIIFIYSTRKHISDDKKIEEMIRRYSTHTPKRYSYSQLKKITNSFTNKLGQGGFSTVYKGKLRDGCDVAVKLLNESKENGEEFMNEVVSITKTSHVNIATLLGFCYERSTRALVYEYMSNGSLDKYIFQRGLQIKNGVELSLSTLYGIVIGVGRGLEYLHCHCNTKILHFDIKPDNILLDNNFCPKISDFGLAKQCMARESHVSMTGMKGTVGFMAPEVIFRNLGKVSHKSDVYSYGMLVLEMLGEKKCPNERVGQSSEGYFPDWIYNNLTRHEIDEGSNCWGNTEEEKQMARKMIIVGLHCIQTSPHHRPSMTHVVAMLEGSIDSLQIPPKPNVPEATRVATAPQGTPGYVDAKYYECCQLTNKSDVFSFGVVLLSFSTTGLLFLPIIATKLIVVAQANSISFAGFNDESLGIMNFSYNSCQSSVGCLCTLE 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29552441 29558905 + CcPI632755_01g016820.1 Cco01g1682 170544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1682 846 SUPERFAMILY Protein kinase-like (PK-like) 434 734 IPR011009 -
Cco01g1682 846 ProSiteProfiles Protein kinase domain profile. 456 737 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1682 846 Gene3D Transferase(Phosphotransferase) domain 1 743 815 - -
Cco01g1682 846 FunFam serine/threonine-protein kinase PBS1-like 424 530 - -
Cco01g1682 846 SUPERFAMILY Protein kinase-like (PK-like) 754 796 IPR011009 -
Cco01g1682 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1682 846 FunFam PR5-like receptor kinase 531 745 - -
Cco01g1682 846 Gene3D Transferase(Phosphotransferase) domain 1 531 742 - -
Cco01g1682 846 Gene3D Phosphorylase Kinase; domain 1 428 530 - -
Cco01g1682 846 Pfam Protein tyrosine and serine/threonine kinase 458 732 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1682 846 SMART serkin_6 456 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1682 846 ProSitePatterns Protein kinases ATP-binding region signature. 462 484 IPR017441 GO:0005524(InterPro)
Cco01g1682 846 PANTHER RUST RESISTANCE KINASE LR10-RELATED 375 751 IPR045874 GO:0004672(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1682 Cco-Chr1:29552441 Cco05g1987 Cco-Chr5:28955823 6.80E-70 dispersed
Cco01g1681 Cco-Chr1:29543526 Cco01g1682 Cco-Chr1:29552441 1.70E-35 tandem
Cco01g1682 Cco-Chr1:29552441 Cco01g1683 Cco-Chr1:29559854 2.30E-179 tandem
Cco01g1682 Cco-Chr1:29552441 Cco10g2178 Cco-Chr10:34929885 1.40E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86531 PF07714 PK_Tyr_Ser-Thr 6.80E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1682 - - - 0.0