Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1683 ATGAAAACTTCCGTCCCTCTCTTCCTCTTCTCTTTCTCCTTCACAATCCTGTTGTTTGATCTTCAGCTCTGTTTCGGCGATGTCGGCAGCGAGGAATTTAAAGCTTGCGGCGTCAATTACAACTGCGGAGATTTGGTTAACATCTCATATCCGTTTTGGGGGAATGAGCGGCAGGAGTTTTGCGGTCGGCGAGAATTCAAGCTCAATTGCAAAGACAACAAAACCACCACGATTCAAATGAATTCTATGGTATTTAATGTTCTAAACATCAGCCAATTGAATCATAGAATGACGATCGCAAGATCAGACTTGTTCGATGATTACTGCCCTAACAATCAAATCGAAGCGGCGACGTTGGATTATAGTCTATTCACGTATTCTTCAAATGATCTGAATCTGTCTGTGTGGTACGATTGTCCGGCGCTACAGGGGATTCCGCGGGATTTCACATTTGAGTGCGGATCAGAAGGGGAAAAAAGAGGGAGAGCGAATTATGCTTTAGAAGAGAGGGCGATGAATTGGAGTTCATATATGGGAGATTGTAGAATGAAAATCGAAGTGACGATTATGATGGATGTATTGAAAGAAGGGGAAATGAACAGAACGATGGTGGTGGAAAGGGGAGTGAAAGAAGGGTTTGAAGTGGAATACGGTGATTATCATACGTTAGCATGTGAGGGATGCAAGGAATACGGCGGCGCGTGTGGTGGAAACGCGACTCAACAGTTTCGGTGCATCTGTGGAACTGATATAAATCCTTACGTTTGCAAACCTCCTTCTCCTCCATCTGGAGCACGATATGCAAATGTTAGATGGAAGATGGTCATTATAGGAGCAATATCTTCGGCCGGCTTCATTTTAATAATCTCCATTATCATCTTCATCTACTTCAAAAGAAAAAGAATCTCAAACAAAGACAAAATCGAGGAAATTATTAAGAGATACTCCACACAGACACCCAAGCGATACAGTTACTCCAAATTAAAGAAGATCACAGACTCTTTCAAGAACAAACTTGGCCAAGGAGGATTTAGCATTGTGTACAAAGGAAAGCTACCAAGTGGATGTGATGTGGCTGTGAAACTTTTAAATGAATCCAGACAAGAAAATGGCCAAGATTTCATCAATGAAGTTGTTAGCATAGCCAAAACTTCGCACGTAAACATAGTTACCCTCTTAGGTTTCTGCTACGAGCAGAAGAAGAAGGCTTTGGTTTATGAATACATGCCTAAAGGGTCATTAGATAAGTACATATCCCACAATAGACTGCAAGAAAATGATATGAAGTTGGATTGGAACATGCTCTACAATGTTGTTATCGGCGTGGCACGAGGTTTAGAGTACTTGCATCGCGGTTGCATCACAAGGATTTTGCACTTTGACATCAAACCACACAACATACTTTTGGATGATGACTTCTGCCCCAAAATCTCAGATTTTGGACTTGCCAAGCAATGCAAGGCGAAAGGAAGTCATGTGTCGATGACAGGCGTAAAAGGGACGGTAGGATTTATTGCACCCGAAGTAATATTTAGGAACTTTGGTAAGGTTTCTCACAAGTCCGATGTATATAGCTATGGAATGTTGGTTCTTGAAATCGTGGGAGCAAGAAAAAATCCCAATTCCAATGATAATGATGGAGTAGAGCAGAGCAGTGAAGAGTACTTTCCTGATTGGATATATAACAATCTCACACAAAGTGAAATAGATGGAGGTTGTTGGTGGGGAAACACAGAGGAAGAAGAAGAAATGGCAAGAAAAATGATAACTGTGGGGTTGCATTGTATTCAAACATTGCCTGACGACAGGCCGTCGATGACCGATGTGGTTGCAATGTTGGAAAGCAGTGTTGATGGCTTACAGATTCCACCAAAACCCAACTTGTTTGGACCTCCTACGACTGATCTCCTCCAAGCTGCTGCTGGTGCTGCTTCTTCTTCATCAAACTCATACTAA 1956 42.08 MKTSVPLFLFSFSFTILLFDLQLCFGDVGSEEFKACGVNYNCGDLVNISYPFWGNERQEFCGRREFKLNCKDNKTTTIQMNSMVFNVLNISQLNHRMTIARSDLFDDYCPNNQIEAATLDYSLFTYSSNDLNLSVWYDCPALQGIPRDFTFECGSEGEKRGRANYALEERAMNWSSYMGDCRMKIEVTIMMDVLKEGEMNRTMVVERGVKEGFEVEYGDYHTLACEGCKEYGGACGGNATQQFRCICGTDINPYVCKPPSPPSGARYANVRWKMVIIGAISSAGFILIISIIIFIYFKRKRISNKDKIEEIIKRYSTQTPKRYSYSKLKKITDSFKNKLGQGGFSIVYKGKLPSGCDVAVKLLNESRQENGQDFINEVVSIAKTSHVNIVTLLGFCYEQKKKALVYEYMPKGSLDKYISHNRLQENDMKLDWNMLYNVVIGVARGLEYLHRGCITRILHFDIKPHNILLDDDFCPKISDFGLAKQCKAKGSHVSMTGVKGTVGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEIVGARKNPNSNDNDGVEQSSEEYFPDWIYNNLTQSEIDGGCWWGNTEEEEEMARKMITVGLHCIQTLPDDRPSMTDVVAMLESSVDGLQIPPKPNLFGPPTTDLLQAAAGAASSSSNSY 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29559854 29564163 + CcPI632755_01g016830.1 Cco01g1683 170545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1683 651 Pfam Protein tyrosine and serine/threonine kinase 335 612 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1683 651 Gene3D Transferase(Phosphotransferase) domain 1 409 621 - -
Cco01g1683 651 Gene3D Phosphorylase Kinase; domain 1 305 408 - -
Cco01g1683 651 SMART serkin_6 333 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1683 651 PANTHER RUST RESISTANCE KINASE LR10-RELATED 237 630 IPR045874 GO:0004672(InterPro)
Cco01g1683 651 Pfam Wall-associated receptor kinase C-terminal 164 248 IPR032872 -
Cco01g1683 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1683 651 Pfam Wall-associated receptor kinase galacturonan-binding 41 101 IPR025287 GO:0030247(InterPro)
Cco01g1683 651 FunFam S-receptor-like serine/threonine-protein kinase 301 408 - -
Cco01g1683 651 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524(InterPro)
Cco01g1683 651 SUPERFAMILY Protein kinase-like (PK-like) 321 631 IPR011009 -
Cco01g1683 651 ProSiteProfiles Protein kinase domain profile. 333 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1683 651 FunFam PR5-like receptor kinase 409 625 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1679 Cco-Chr1:29534943 Cco01g1683 Cco-Chr1:29559854 1.40E-198 dispersed
Cco01g1681 Cco-Chr1:29543526 Cco01g1683 Cco-Chr1:29559854 2.40E-122 dispersed
Cco01g1683 Cco-Chr1:29559854 Cco05g1987 Cco-Chr5:28955823 1.20E-69 dispersed
Cco07g1554 Cco-Chr7:29585353 Cco01g1683 Cco-Chr1:29559854 2.70E-23 dispersed
Cco01g1682 Cco-Chr1:29552441 Cco01g1683 Cco-Chr1:29559854 2.30E-179 tandem
Cco01g1683 Cco-Chr1:29559854 Cco01g1684 Cco-Chr1:29565024 1.10E-88 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86532 PF07714 PK_Tyr_Ser-Thr 2.50E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1683 - - - 0.0