Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1686 ATGGCTGCCAAGAGGTCTTTATCCGAAACAGAGTCTTGTTCAGATCAGAGGCTAGAGGAGAAGCGCCCACGACATACGTTTTCATCGATCATTGGGGACGTTGTAATGGTAAATTCCATAAGGCATCTTTCAAAAGCATTGGAACCGTTGCTTAGACGAGTGGTAACAGAGGAAGTTGACAGATGTTTATTACGATATTCAAGGCCATTAACCAGAGCATCTTCGTCAAAAATACAAGCCCTAGAACCATCTCGTTTTCAATTGTATTTTGTAAATAGTCTTCCCTCTACTATTTTTAGTGGAAGTAAAATTACCGATGTGGAAGGTCAGGCGTTGCGACTCGCCGTCGGGGTCGGTGGAGAAGATCCGTCGTTGTTGCCGATTTCGTCGCCGTTGAAAATTGAAATGGTGGTGTTGGACGGCGAATTTGCAGCGGAAGATCGAGAGGATTGGACAGCTGAGGAATTTAATGCCAGCATTGTGAAAGAAAGATCTGGAAAGAGGCCGTTGCTTCACGGTGAAATGAATGCAACTCTCCGCCACTGCGCTGCCACGATTGGGGCTCTTGAATTTACCGATAACTCAAGCTGGATTCGGAGCAGGAAATTTCGGCTTGGCGCCCGAGTTGTGTCCGGTTCGGACCGAGATAACTTACACCGGATTCGTGAAGCCATTACCGAACCCTTTGTAGTCAAAGATCACCGCGGCGAATTGTACAAAAAGCATTATCCTCCAATGTTGAGTGATGAAGTTTGGAGATTGGAAAAGATTGGAAAAGAAGGAGTCTTCCACAAGAAGTTACGCAGTGACAATATCAAGACAGTTCAAGACTTCTTAAAGCTCTATACCATTGATCCACAAAAGTTAAGAAGGATTTTAAGGTGTGGAATGTCAGACAAGATGTGGGAGGCAATAGTAAAACATGCAAAAACTTGTGAATTGGGAAAAAAGCTCTACATGTTTCGTGGACCCAATTTCTTACTAATTTTGAACCCAATTTGTGAAGTTGTTAGTGCCACGATTGGGAACCAAATATATTCATCTCGAGACGACTCCAATATACCGAAGGAATACTTGGAGAATTTGAGGAGACAAGCATTTGATAATTGGTTTTCGTTACAAGACTTTGAAGGAAATTTAGGAGAATCATCACCCCATGGAAATGAAGGAAGTAATGTTATATCGGAGAATCTGTTGCTTCAAAGTGGCTACGAGATCCTAAGTGGTCAACTTGAATGCCAAGATTGGGATTTCAATCCAGAGTATAATATTTCTGCAACAATTCAAGAGAATTTTCACTATAATTAA 1308 42.2 MAAKRSLSETESCSDQRLEEKRPRHTFSSIIGDVVMVNSIRHLSKALEPLLRRVVTEEVDRCLLRYSRPLTRASSSKIQALEPSRFQLYFVNSLPSTIFSGSKITDVEGQALRLAVGVGGEDPSLLPISSPLKIEMVVLDGEFAAEDREDWTAEEFNASIVKERSGKRPLLHGEMNATLRHCAATIGALEFTDNSSWIRSRKFRLGARVVSGSDRDNLHRIREAITEPFVVKDHRGELYKKHYPPMLSDEVWRLEKIGKEGVFHKKLRSDNIKTVQDFLKLYTIDPQKLRRILRCGMSDKMWEAIVKHAKTCELGKKLYMFRGPNFLLILNPICEVVSATIGNQIYSSRDDSNIPKEYLENLRRQAFDNWFSLQDFEGNLGESSPHGNEGSNVISENLLLQSGYEILSGQLECQDWDFNPEYNISATIQENFHYN 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29580226 29582169 - CcPI632755_01g016860.1 Cco01g1686 170548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1686 435 PANTHER OS02G0177800 PROTEIN 3 383 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
Cco01g1686 435 MobiDBLite consensus disorder prediction 1 20 - -
Cco01g1686 435 Pfam Calmodulin binding protein C-terminal domain 317 375 IPR046829 -
Cco01g1686 435 Pfam Calmodulin binding protein central domain 246 312 IPR046830 -
Cco01g1686 435 Pfam Calmodulin binding protein-like N-terminal domain 86 234 IPR046831 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1686 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1686 Cco-Chr1:29580226 Cco06g1513 Cco-Chr6:25640849 7.00E-87 dispersed
Cco01g1686 Cco-Chr1:29580226 Cco01g1688 Cco-Chr1:29611983 3.60E-200 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g293 Blo04g00832 . . . . . . . Cmo13g01056 Cmo18g00039 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00676 . . . . . . . . . . Sed08g2191 . . . Cma18g00048 . Car18g00042 . . Bhi08g01244 Tan05g2251 Cmetu12g0949 Lac10g0248 Hepe07g2379 . . Cla04g01080 Cam04g1127 Cec01g1640 Cco01g1686 Clacu04g1157 Cmu04g1138 Cre01g1436 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002933 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 2 1 2 1 1 1 1 1 1 1 3 6 3 49