Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1699 ATGCTTTCGATGGGGCTTTTGTCTTCTCTCTGCGTCTGCTTGCAGAAAAGACTTAAAGCAGCTAATTCTGCGAGTGCCGATGAAGCGGATGATGAAGATGTATCCACTGACATCTTCTTTGAATTAAGTACTTTGCAAATTGCAACTAATTTCTTTTCCGAGGCGAATAAACTCGGCAATGGAGGGTTTGGGCCCGTCTACAAGGGGTTGATGCCAAATGGCCAACAAGTTGCAGTCAAGAAGCTCTCGTTAGATTCAAGACAAGGAGTGAGGCAATTTAGTAATGAAGTGAAACTTCTACTGAGAATTCAGCACCGAAATTTGGTCATTTTATTGGGCTGTTGTGTAGAAGGACCTGAAAAGATGCTTGTATATGAGTACTTACCAAACAGAAGTCTTGATTACTTTATTTTCGATAAAAAGAAGTCTCCTTCCTTGGATTGGACAACACGGTTTCATATAATTACAGGTATAGCGAGAGGTCTTCTCTACTTACATGAAGAGGCTCCTGCAAGAATTATACATAGAGATGTCAAAGCTAGTAACATATTATTAGATGAGCAATTGAATCCGAAAATCTCAGATTTTGGATTAGCTCGACTTTTTCCTGGGGATGACACACATTTGAATACATTTAAGATTGCCGGCACTCATGGCTATATGGCTCCTGAATATGCAATTCATGGATATTTGTCTGTGAAGAGTGACGTTTTCAGTTTTGGGATCCTGGTATTAGAGATTGTTAGTGGAAGAAAAAATTATGACGACCGGCTTGGTGCACAGCAAGTGGACCTCTTGGGATATGCATGGTTGCTTTACCAAGAAGGAAGGATTTTAGAATTAGCTGATAAAAGCTTAACAAAATGCAATGTAGATGAGGCAGCTATGTGCATTCAGTTGGGTTTGTTATGTTGTCAAGCAAGTGTCACAGATAGGCCTGACATGAATACCATTCATCTCATGCTTTCTAGTGATTCGTTCACGTTGCCGCGACCTGGAAGACCTGGAATTCATGGTCGAGCAGCACGTCGAACAACTACCTCTACTTCGAACTTCACCAAGACAAATACTAGTACACAAACTGGCGTTACTAGAGCTTCAACTAGTAGTAGTTTGGTAGAGGATTATTCAAGAAATTCCATTTCTGTTTCTTCTATTGATGAAGGCAGGTGA 1173 40.58 MLSMGLLSSLCVCLQKRLKAANSASADEADDEDVSTDIFFELSTLQIATNFFSEANKLGNGGFGPVYKGLMPNGQQVAVKKLSLDSRQGVRQFSNEVKLLLRIQHRNLVILLGCCVEGPEKMLVYEYLPNRSLDYFIFDKKKSPSLDWTTRFHIITGIARGLLYLHEEAPARIIHRDVKASNILLDEQLNPKISDFGLARLFPGDDTHLNTFKIAGTHGYMAPEYAIHGYLSVKSDVFSFGILVLEIVSGRKNYDDRLGAQQVDLLGYAWLLYQEGRILELADKSLTKCNVDEAAMCIQLGLLCCQASVTDRPDMNTIHLMLSSDSFTLPRPGRPGIHGRAARRTTTSTSNFTKTNTSTQTGVTRASTSSSLVEDYSRNSISVSSIDEGR 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29716306 29721164 + CcPI632755_01g016990.1 Cco01g1699 170561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1699 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1699 390 FunFam Cysteine-rich receptor-like protein kinase 2 16 127 - -
Cco01g1699 390 MobiDBLite consensus disorder prediction 333 370 - -
Cco01g1699 390 Gene3D Transferase(Phosphotransferase) domain 1 128 328 - -
Cco01g1699 390 SUPERFAMILY Protein kinase-like (PK-like) 40 338 IPR011009 -
Cco01g1699 390 CDD STKc_IRAK 58 322 - -
Cco01g1699 390 MobiDBLite consensus disorder prediction 342 370 - -
Cco01g1699 390 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 336 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco01g1699 390 SMART serkin_6 52 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1699 390 Pfam Protein tyrosine and serine/threonine kinase 55 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1699 390 Gene3D Phosphorylase Kinase; domain 1 11 127 - -
Cco01g1699 390 FunFam Cysteine-rich receptor-like protein kinase 41 128 328 - -
Cco01g1699 390 ProSiteProfiles Protein kinase domain profile. 52 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1699 Cco-Chr1:29716306 Cco02g0155 Cco-Chr2:1580425 7.10E-99 dispersed
Cco01g1699 Cco-Chr1:29716306 Cco10g2184 Cco-Chr10:34958252 1.10E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86534 PF07714 PK_Tyr_Ser-Thr 8.10E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1699 - - - 0.0