Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1702 ATGGCTGAGTTCACTCCAAACTTTCAAAGCTTAAAGCCATCATCTTTTCCTCTAATGGATGTGAATCCCAACCAAAATCCAACTCTACTTCATAACCCAAATCTTAATTTTCTTCACAACAACATTCCTGTTTTGTTCAAGGACAGTTTCTTAACCAATCAAACTCCTCCTCCTCCTCCTAGATTCCTGGAAAATTGGGGAGAAAATTTCTCTCAAGCCAATCAGATCACTCCTATTTCACATGTTTTTCAGCCTACAAATCCATTTGGAAATGACCTCCATGGAAGCAACAAAAGAAAGCTTGAAAATGATGCTTATGAAAGCAGCTCTGCCAACTCAACCCCTCAAATTTCTGAAAATGGGATCAAGACAAAAAATAAGACTGGAAAAGGAAAGCGGTCGAAAAAAAGCGACGAAAACGACGGCGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCACAGTGTAGCAGAAAGGATAAGAAGAGGGAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTACAAAATCAAGTTGAGTTTCTGTCCATGAAACTCACAGCTGCAAGCTCCTTTCACGACTTCAACTCAGACTCAGATGCTGATGACAAATTGAAGGCAAAGGAAATGAGAGAAGGAAACGGAGGATTATTGGTTGCATCAACTCAACTTGGTCCTTTTGACTTGAGCTTTGGTTCTTATTCAACATTGCCATTCAACACCATATGA 825 40.0 MAEFTPNFQSLKPSSFPLMDVNPNQNPTLLHNPNLNFLHNNIPVLFKDSFLTNQTPPPPPRFLENWGENFSQANQITPISHVFQPTNPFGNDLHGSNKRKLENDAYESSSANSTPQISENGIKTKNKTGKGKRSKKSDENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFHDFNSDSDADDKLKAKEMREGNGGLLVASTQLGPFDLSFGSYSTLPFNTI 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29741474 29743020 + CcPI632755_01g017020.1 Cco01g1702 170564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1702 274 FunFam transcription factor BEE 3-like 154 225 - -
Cco01g1702 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983(InterPro)
Cco01g1702 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 223 IPR036638 GO:0046983(InterPro)
Cco01g1702 274 MobiDBLite consensus disorder prediction 132 164 - -
Cco01g1702 274 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 101 231 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cco01g1702 274 SMART finulus 163 213 IPR011598 GO:0046983(InterPro)
Cco01g1702 274 MobiDBLite consensus disorder prediction 81 164 - -
Cco01g1702 274 Gene3D - 154 226 IPR036638 GO:0046983(InterPro)
Cco01g1702 274 CDD bHLH_AtBPE_like 147 232 - -
Cco01g1702 274 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983(InterPro)
Cco01g1702 274 MobiDBLite consensus disorder prediction 106 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1702 Cco-Chr1:29741474 Cco08g0631 Cco-Chr8:16651876 2.90E-38 dispersed
Cco01g1702 Cco-Chr1:29741474 Cco06g1671 Cco-Chr6:27293300 1.00E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58642 PF00010 HLH 5.30E-05 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1702 - - - 0.0