Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g1702 | ATGGCTGAGTTCACTCCAAACTTTCAAAGCTTAAAGCCATCATCTTTTCCTCTAATGGATGTGAATCCCAACCAAAATCCAACTCTACTTCATAACCCAAATCTTAATTTTCTTCACAACAACATTCCTGTTTTGTTCAAGGACAGTTTCTTAACCAATCAAACTCCTCCTCCTCCTCCTAGATTCCTGGAAAATTGGGGAGAAAATTTCTCTCAAGCCAATCAGATCACTCCTATTTCACATGTTTTTCAGCCTACAAATCCATTTGGAAATGACCTCCATGGAAGCAACAAAAGAAAGCTTGAAAATGATGCTTATGAAAGCAGCTCTGCCAACTCAACCCCTCAAATTTCTGAAAATGGGATCAAGACAAAAAATAAGACTGGAAAAGGAAAGCGGTCGAAAAAAAGCGACGAAAACGACGGCGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCACAGTGTAGCAGAAAGGATAAGAAGAGGGAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTACAAAATCAAGTTGAGTTTCTGTCCATGAAACTCACAGCTGCAAGCTCCTTTCACGACTTCAACTCAGACTCAGATGCTGATGACAAATTGAAGGCAAAGGAAATGAGAGAAGGAAACGGAGGATTATTGGTTGCATCAACTCAACTTGGTCCTTTTGACTTGAGCTTTGGTTCTTATTCAACATTGCCATTCAACACCATATGA | 825 | 40.0 | MAEFTPNFQSLKPSSFPLMDVNPNQNPTLLHNPNLNFLHNNIPVLFKDSFLTNQTPPPPPRFLENWGENFSQANQITPISHVFQPTNPFGNDLHGSNKRKLENDAYESSSANSTPQISENGIKTKNKTGKGKRSKKSDENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFHDFNSDSDADDKLKAKEMREGNGGLLVASTQLGPFDLSFGSYSTLPFNTI | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 29741474 | 29743020 | + | CcPI632755_01g017020.1 | Cco01g1702 | 170564 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g1702 | 274 | FunFam | transcription factor BEE 3-like | 154 | 225 | - | - | |
Cco01g1702 | 274 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 157 | 207 | IPR011598 | GO:0046983(InterPro) | |
Cco01g1702 | 274 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 155 | 223 | IPR036638 | GO:0046983(InterPro) | |
Cco01g1702 | 274 | MobiDBLite | consensus disorder prediction | 132 | 164 | - | - | |
Cco01g1702 | 274 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 101 | 231 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cco01g1702 | 274 | SMART | finulus | 163 | 213 | IPR011598 | GO:0046983(InterPro) | |
Cco01g1702 | 274 | MobiDBLite | consensus disorder prediction | 81 | 164 | - | - | |
Cco01g1702 | 274 | Gene3D | - | 154 | 226 | IPR036638 | GO:0046983(InterPro) | |
Cco01g1702 | 274 | CDD | bHLH_AtBPE_like | 147 | 232 | - | - | |
Cco01g1702 | 274 | Pfam | Helix-loop-helix DNA-binding domain | 161 | 208 | IPR011598 | GO:0046983(InterPro) | |
Cco01g1702 | 274 | MobiDBLite | consensus disorder prediction | 106 | 124 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1702 | Cco-Chr1:29741474 | Cco08g0631 | Cco-Chr8:16651876 | 2.90E-38 | dispersed | |
Cco01g1702 | Cco-Chr1:29741474 | Cco06g1671 | Cco-Chr6:27293300 | 1.00E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58642 | PF00010 | HLH | 5.30E-05 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g1702 | - | - | - | 0.0 |