Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1712 ATGGCTCGGATCTTTGAGTATTTCGTGGTTTGTGGGATCGGGCCGGAGATTCGGACTCTAGATGGCAACAAGGGGTTTCATGGATTCAGTTACCTGTATCTACCCTCTCTTCTCGATCAGTATCCTCCTTCCAACAATTCTCGTTGTCCTCCTCCACCACCTCAGCTCCCAACGTGTGTTCTACCAGCTGGGGTCGAGTTTTTTTCATCGGGATTTGATTCCAGTGACCCCTGCACTTTTCCGCGGAGTTATCCGATTGTTTTGACGGAGGGCGATGGGTCAAAAATATATGTCAGTTGCATTGCTTTTAGAGACCCTGTTTGTGAGGACATTGCCGAAGCTTACCGCATTCCACCAAATTCTTATGCTGATAAATGTATCTGTGTTGTTTCGCGTTCGCCCAGCTTCCGTGTCCTTAAAGATGCGTTGGAGGAATTGTTTGCTTTGTGCTTCTCCAGCACTGGAAGTAGCAAGCCTCTGTGGGATATCATAGCACACATGGTCTCCAATGTACCACTGTCTACTCCTGGGAAGGATCGGATTTTGTTTAGTATTGAGAATTGCCTTCTATCTGTTCAGGCTCCATCCAAGGATGGGCTTCCCTATGCTGATATTTCGTTTCAGCCGCTTATGCAGTGCTTGGATTTGGAAAATGTGATCAAACTTTTTACTGCTGTCTTGCTGGAGAGGAGGATTCTTCTTCGATCAAACAAGTATTCACTTTTAACTCTTGTATCCGAAGCCATTTGTCATTTAATATATCCATTTAGATGGCAGCACGTCTACATTCCGTTACTCTTTTTCAGTGGAGTAGACTATATTGATGCTCCCACACCATATATGATGGGTCTTCATTCCGGCGTTGATACATCTTATCTGGCAATGGATGGTGTTGTTGTAGTGGACCTTGAGTATAATTGTATCACAACTACTGAGGAAATACCACCTATTCCAGAACCAGAACTTGGATCTTTGCGTTGCGAGCTGATGAAGTTAATATATCCCAATGTTGTTAGCATAGATCAAATGAGGTCTGATTTGCGTAGCTCATCTGATCAGTACCCTAGAGGTAGCAGCAAGCCTTGGGGAGAAGACCATGATCTTCAGCTTAGGTTGATATTTTTAAAATTCTTTGCATCACTCTTAAGTGGCTATCGCAATTTTATAGAAAACAATGCGACTGATGTCTTCAATGCACAAGCATTCTTGAAGAAGCGTTCGCGATCAACTAATCAACCAGAAGATCCCATGATAACTCAGTTCCTGGAGTCCCAAGGGTTTCTAGACTATCTAGAGAGATGCATAGGTTCTGATCAAAGTAATAATAATATTCTCGACAAGTTACAAGATGCAATTGGGAGGGGTCAAAATCCTCTTTCAATTCTCCCATCATCGGTTGAACCTGAGATCGTAACAATCTCTGACCCTGATTTGGGAACATCAGGTTCTGGTGCCAAGTACACTTATGATAGATTTCCTTCAAACATCAGAACTGAGGAGCAGGAAGAAAAGAGAAAACAAATTCTAGCAGCAGCAAGTGGAGCTTTTGAATACTCTGGAAAACATAATCCTAATTCACCTTCTATGCTGATGGGCAAGGATCTGAAAGCAGAAAGCCTCAGTCCAATGGAGAGACAGGCCGAAAGGGATCGCATGGTTTTGGACATAAAAGTCAAGCTACAGGGACTCTGGCTGCGTCTTCTGAAACTGGGTGCAACTGATGATCCTCTTTCTTCTTTTGAATATGGCACTATTCTTGCTTTGATTGAGTCTGATGCAGAGGGAATTGGTGGTAGTGGTTTTGTTGAGTGTATTAGAGAGCACATAAATACAGGATGGCTTTGTCAGTTAACCGATGAACAATTTATTGCTGTGAAAGAATTGCTAAAAACAGCAATCAGTCGTGCAACTTCACGAAATGATATATTGACAATTAGGGATGCCCTTGAAGTGTCTGGTGAAATGTACAAGAAAGACCCTAATAATGTTCCTGATTACATCCAACGCCATCTTATTTCTCTATCTATATGGGAGGAGTTAAGGTTTTGGGAAGGTTATTTTGATTATTTGATGGAACGATCTTCAAATAAATCCGCAAATTATGCATCTCTGGTTTCTGCACAGCTAATTGTGATGGCATCGCACATGGCTGGGCTTGGGCTTCCTGATACTGATGCTTGGTACATGATTGAGACAATTGCGGAGAAGAACAGCATTGGATACAAGCAACTCATAAAGCTCCGAGGTTTCTTATCCCATATCCAGCAGCTGCGCATTAGTTATTGGGGACTTTCTTCTGTTAAGTTGCAATCCATATCTGCCCATGCATTGCCATCTCCGCTTCCCAAAGATGGATCTGATCAGAATCAGCAACCTGCTGAGGCTTCTGTTGTTGGAAGAAGCTGGGTTCAGAGCATGTTCAGCAGGGATACATCTGCAAGGATGTTGGGTCGTAGCGGCCGTTGGTCTTCTGATGCCACGAGTGAGAGTGGTACTCCTCAAAGACAGGATTTATCCTCAGCTGGGCAGAAAAAAGTTCAAAGCAATATTCGTGTTCTTAGGGGTCACAGTGGAGCTGTGACAGCACTTCATTGTGTTACAAAAAGGGAGGTGTGGGACTTGGTGGGAGACCGTGAGGATGCAGGCTTTTTCATTAGTGGAAGCACGGACTGCTCGGTCAAGATATGGGATCCAAGTCTTCGTGGTTCTGAATTGCGAGCAACTTTAAAGGGTCACACAGGACCTGTTCGTGCAATTAATTCTGATCGAGGAAAAGTAGTTTCTGGGTCTGATGATCAGTCAGTTATTGTATGGGATAAGCAAACAACCCAGCTTCTAGAAGAGCTGAAAGGCCACGATGCTCAGGTCAGTTGTGTGCGTATGCTGTCAGGCGAACGTGTCCTTACTGCTGCACATGATGGAACCGTGAAGATGTGGGATGTTAGAACTGATACTTGTGTGGCAACTGTTGGTCGTTGCTCTAGTGCAGTTCTATGCATGGAATATGATGACTCTACAGGAATATTGGCTGCTGGTGGTAGAGATACAGTAGCAAATATCTGGGACATCCGTGCTGGCCGGCAAATGCACAAGCTTTTAGGTCATACGAAATGGATACGCTCAATAAGAATGGTAGGAGACACCATAGTTACCGGTAGTGATGATTGGACCGCTAGATTGTGGTCTGTTTCTCGAGGAACATGTGATGCTGTTCTAGCATGCCATGCTGGCCCAATATTGGCCGTTGAGTATTCTACACTGGACAAAGGAATAATAACTGGTTCAACTGATGGACTTCTCCGTTTTTGGGAAAACGAGGATGGGGGTATTAGATGCGTGAAGAATGTCACCATTCATAGTGCTGCCATACTGTCCATCAGTGCTGGGGAACATTGGTTAGGAATTGGAGCGGCAGATAACTCTATGTCTCTCTTTCATCGGCCGCAAGAGAGACTCGGTGGCTTCTCTAACACGGGTGCAAAAATGGCTGGATGGCAACTGTACAGAACCCCACAAAAGACTGCAGCCATGGTACGATGTGCGGCTTCAGACCTCGAAAGGAAACGAATATGCACTGGCGGCCGTAATGGCCTTCTGAGGCTCTGGGAAGCAACCATCAACATCTGA 3627 44.55 MARIFEYFVVCGIGPEIRTLDGNKGFHGFSYLYLPSLLDQYPPSNNSRCPPPPPQLPTCVLPAGVEFFSSGFDSSDPCTFPRSYPIVLTEGDGSKIYVSCIAFRDPVCEDIAEAYRIPPNSYADKCICVVSRSPSFRVLKDALEELFALCFSSTGSSKPLWDIIAHMVSNVPLSTPGKDRILFSIENCLLSVQAPSKDGLPYADISFQPLMQCLDLENVIKLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSYLAMDGVVVVDLEYNCITTTEEIPPIPEPELGSLRCELMKLIYPNVVSIDQMRSDLRSSSDQYPRGSSKPWGEDHDLQLRLIFLKFFASLLSGYRNFIENNATDVFNAQAFLKKRSRSTNQPEDPMITQFLESQGFLDYLERCIGSDQSNNNILDKLQDAIGRGQNPLSILPSSVEPEIVTISDPDLGTSGSGAKYTYDRFPSNIRTEEQEEKRKQILAAASGAFEYSGKHNPNSPSMLMGKDLKAESLSPMERQAERDRMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINTGWLCQLTDEQFIAVKELLKTAISRATSRNDILTIRDALEVSGEMYKKDPNNVPDYIQRHLISLSIWEELRFWEGYFDYLMERSSNKSANYASLVSAQLIVMASHMAGLGLPDTDAWYMIETIAEKNSIGYKQLIKLRGFLSHIQQLRISYWGLSSVKLQSISAHALPSPLPKDGSDQNQQPAEASVVGRSWVQSMFSRDTSARMLGRSGRWSSDATSESGTPQRQDLSSAGQKKVQSNIRVLRGHSGAVTALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTGPVRAINSDRGKVVSGSDDQSVIVWDKQTTQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDTVANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTIVTGSDDWTARLWSVSRGTCDAVLACHAGPILAVEYSTLDKGIITGSTDGLLRFWENEDGGIRCVKNVTIHSAAILSISAGEHWLGIGAADNSMSLFHRPQERLGGFSNTGAKMAGWQLYRTPQKTAAMVRCAASDLERKRICTGGRNGLLRLWEATINI 1208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29856943 29869778 + CcPI632755_01g017120.1 Cco01g1712 170574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1712 1208 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 949 983 - -
Cco01g1712 1208 Gene3D - 1 172 - -
Cco01g1712 1208 CDD WD40 849 1145 - -
Cco01g1712 1208 ProSiteProfiles Trp-Asp (WD) repeats profile. 994 1031 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 909 939 - -
Cco01g1712 1208 ProSiteProfiles Trp-Asp (WD) repeats profile. 1032 1071 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 PRINTS G protein beta WD-40 repeat signature 967 981 IPR020472 -
Cco01g1712 1208 PRINTS G protein beta WD-40 repeat signature 1049 1063 IPR020472 -
Cco01g1712 1208 PRINTS G protein beta WD-40 repeat signature 926 940 IPR020472 -
Cco01g1712 1208 ProSiteProfiles Trp-Asp (WD) repeats profile. 909 948 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
Cco01g1712 1208 SMART uDENN_cls 1 104 IPR005113 -
Cco01g1712 1208 MobiDBLite consensus disorder prediction 783 798 - -
Cco01g1712 1208 Gene3D - 202 387 IPR043153 -
Cco01g1712 1208 ProSiteProfiles Trp-Asp (WD) repeats profile. 879 897 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 ProSitePatterns Trp-Asp (WD) repeats signature. 967 981 IPR019775 -
Cco01g1712 1208 PANTHER DENN DOMAIN-CONTAINING PROTEIN 4 27 1201 IPR051696 GO:0031410(PANTHER)|GO:0032483(PANTHER)
Cco01g1712 1208 Gene3D - 1007 1207 IPR015943 GO:0005515(InterPro)
Cco01g1712 1208 Pfam uDENN domain 35 103 IPR005113 -
Cco01g1712 1208 ProSitePatterns Trp-Asp (WD) repeats signature. 1009 1023 IPR019775 -
Cco01g1712 1208 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1072 1104 - -
Cco01g1712 1208 MobiDBLite consensus disorder prediction 778 798 - -
Cco01g1712 1208 FunFam DENN domain and WD repeat-containing protein SCD1 1031 1208 - -
Cco01g1712 1208 ProSiteProfiles Tripartite DENN domain profile. 19 442 IPR037516 -
Cco01g1712 1208 ProSiteProfiles Trp-Asp (WD) repeats profile. 949 989 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 FunFam DENN domain and WD repeat-containing protein SCD1 804 1030 - -
Cco01g1712 1208 ProSiteProfiles Trp-Asp (WD) repeats profile. 1072 1104 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 SMART DENN_cls 122 306 IPR001194 -
Cco01g1712 1208 SUPERFAMILY WD40 repeat-like 850 1106 IPR036322 GO:0005515(InterPro)
Cco01g1712 1208 FunFam DENN domain and WD repeat-containing protein SCD1 202 387 - -
Cco01g1712 1208 Pfam WD domain, G-beta repeat 1066 1103 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 Pfam WD domain, G-beta repeat 905 939 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 Pfam WD domain, G-beta repeat 945 980 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 Pfam WD domain, G-beta repeat 1027 1062 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 Pfam WD domain, G-beta repeat 849 897 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 Pfam WD domain, G-beta repeat 985 1022 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 FunFam DENN domain and WD repeat-containing protein SCD1 1 175 - -
Cco01g1712 1208 SMART WD40_4 1065 1104 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 SMART WD40_4 846 897 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 SMART WD40_4 942 980 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 SMART WD40_4 983 1022 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 SMART WD40_4 1164 1203 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 SMART WD40_4 1025 1062 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 SMART WD40_4 902 939 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 SMART WD40_4 1109 1146 IPR001680 GO:0005515(InterPro)
Cco01g1712 1208 Gene3D - 837 1006 IPR015943 GO:0005515(InterPro)
Cco01g1712 1208 SMART dDENN_cls 366 434 IPR005112 -
Cco01g1712 1208 MobiDBLite consensus disorder prediction 814 844 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1712 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1712 Cco-Chr1:29856943 Cco07g1394 Cco-Chr7:28010632 1.10E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g344 . . . . . Bpe13g00342 Bma06g00001 . Cmo13g01072 . . . . . . Cpe20g00113 . . . . . . . . . . . . . . . Cone2ag0645 . . . Lsi02g00171 Csa01g00654 Chy12g01446 Cme12g01886 . . . . . . . . Sed08g2171 . . Cma13g01032 . Car13g00866 . . . Bhi08g01221 Tan05g2280 Cmetu12g2040 Lac10g0223 Hepe07g2408 . . Cla04g01103 Cam04g1156 Cec01g1666 Cco01g1712 Clacu04g1183 Cmu04g1163 Cre01g1461 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30