Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1719 ATGGCCAAGCCTCGCAAGCCCAAGAACACCGACGACGCGAAGCCACCTGACAACTCCGGAGCTGTAGTTCGTCACCAGAAGCTTTGCCTTTCCATCGACATTGACAAACGTCGCGTTTATGGGTTCACCGAGTTGGAAATTGCGGTTCCTGATATTGGCATAGTTGGGTTGCACGCGGAGAATCTTGGGATTGGGAGTGTTTCAGTGGATGGTGACCCTACTGAATTCGAGTATTATCCGCGGCCTCAACATGTGGAAAGTGAGAAGAGTTTTAAAGCAGTGTCGTCGCCGAGCTCTGCTGCAGATGCTGCGGGGTCAATTTATTTGTCTTCAATCGAGAAAGAATTGATTCCTAATTTGTTGATAAACTGCTGCAAGGCTTTCAAGAGCGGAAGTGAGCAGCAAGACCAGCCATTTCTGGAGAATGGAGTGCAACCTGCGGAGGAGGACAAGCAGAATATAAGGCTGGTTCGTATTGATTACTGGGTAGAGAAATCAGAGGTAGGTATTCACTTCTATAACCACATGGCTCACACTGATAACCAAATAAGGCGTGCAAGGTGCTGGTTCCCTTGTATGGATGATGGCCTACAACGATGCAAGTATGACCTCGAGTTTACTGTCTCTCAAAATCTTGTGGCTGTCAGTAATGGAATTCTGTTGTACCAGGTCTTGAGCAAGGACAATCCTCCCCGCAAAACTTATGTGTATCGAGTAGACATCCCCGTCAATGCACATTGGATATCACTTGCTGTTGGACCGTTTGAAATCCTTGCTGATCATCAAAATGGACTTATATCACACATGTGCTCGCCCGTTAACTCTTTAAAGCTTAAGCATACGGTGGAATTTTTTCATAGTGCATTCAGCTGCTATAAGGATTACCTTTTGGTGGACTTCCCATTTGGGTCATACAAACAAATCTTCATAGAGCCGGAGATTACAGTATCATCAGCATGTTTGGGAGTTTCCATGTGTATATTTAGTTCTCATCTTTTGTTTGATGAGAAAATCATCGATCAGACCATAGATACTAGGATTAAACTTGCTTATGCTCTGGCAAGACAGTGGTTTGGCATTTATATTACGCCTGAAGCCCCAAATGACGAGTGGTTGTTGGATGGTCTTGCTGGTTTCTTGACTGATTTATTTATCAAGAAGAACTTGGGAAATAATGAGGCACGCTACCAGAGATACAAGGCCAATTGTGCTGTTTGTAGAGCAGATGATAGTGGTTTGACCACCTTGAGTTCCTCTTCTGCTTGCAAAGATTTGTATGGGACCCAACATATTGGTATATACGGAAAAATAAGATCATGGAAGTCTGTGGCAATCCTTCAAATGTTGGAAAAGCAGATGGGGCCTGAGTCTTTTCGCAAGATTCTACAAAATATTGTTTCTCGTGCTAAAGATACTACCTCTACGTCACACTCACTTAGCACGAAAGAGTTTCGTCAATTGGCCAATAAGATTGGAAACCTTGAGCGGCCATTTCTCAAAGAGTTCTTTCCTCGGTGGGTCGAATCATGTGGTTGTCCCCTGCTGAGGATGGGATTTTCGTACAACAAGCGGAAAAATATGGTTGAGATGGCGGTGTCACGGGAATGCACAGTTACACCAGCCACAAGTGTAGAAAATCGGGACAGTGATGCTGGATGGCCTGGTATGATGAGTATCAGGATTTATGAGCTTGATGGTGTGTTTGATCATCCAGTTCTTCCAATGACTGGAGAGTCCTGGCAGCTACTAGAAATACAATGCCACTCCAAACTTGCTGCTAGGCGCCTCCAGAAAACTAAAAAGGGATCGAAAGCTGATGGTTCTGATGACAATGCTGATATACCTGCACTCGACGTTCGCTCTAGTGTGGAATCTCCTTTGTTATGGTTGAGAGCAGACCCTGAGATGGAATACCTTGCTGAAATTCATTTTCATCAACCTGTTCAGATGTGGATCAATCAATTGGAGAAGGACAAGGATGTCATTGCTCAAGCACAAGCAATCACGACATTAGAGATGTTGCCTCAACCATCTTTTTCTGTTGTTAATGCTCTTAACAATTTCCTCAGAGACCCCAAGGCCTTCTGGAGAGTAAGAATTGAAGCAGCATTGGCAATGGCCAAAACAGCCTCAGAGGATACTGATTGGGCTGGTTTGCTTAATTTGATTAAATTTTTTAAAAGTCAGAGGTTTGATGCAGATACTGGACTCCCCAAGCCAAATGAATTTCGTGATTTTCCTGAGTATTTTGTTCTTGAGGCCATTCCTCATGCTGTTGCTATGGTCAGGGCCACCGACCAAAAAAGCCCTAGAGAAGCTGTTGAGTTTGTTTTGCAACTTTTGAAGTACAACGACAACAATGGGAATCCTTTCTCAGATGTTTTCTGGTTGGCTGCACTAGTCCAGTCAGTTGGTGAGCTTGAATTTGGGCAACAGAGCATTCTGTTTTTAGCATCGCTTCTTAAAAGGATTGATAGACTTCTGCAGTTTGACAGGCTGATGCCTAGCTATAACGGGATCTTGACTATTAGCTGCATCAGAACCTTGACCCAGATTGCACTGAAACTATCTGGACTTCTCTCTCTTGATCGTATCTTTGAACTGATAAGACCTTTTCGAGATTTTAAGTCCATGTGGCAAGTTCGAATTGAGGCAACTCGAGCACTTCTCGATCTTGAGTACCACTGCAACGGAATTGATGCAGCATTGTTATTGTTTATTAAATATCTAGAAGAAGAGAATTCCTTGCGAGGCCAAGTGAAGCTGGGGGTCCATGTTATGCGTTTATGTCAGATAATGAGAAGATCTGATTCAAATGATGTAGTCAATAATGACACTCTTGTTGCTTTGCTCCTCCTACTTGAAGGCCACATGGCGTTTAACAATGTCCATCTTCGTCACTACTTGTTCTGTATTTTACAAGTCCTTGCAGGACGGCCCCCAACACTTTATGGAGTTCCTAGAGAATATAAAACATTGCATATGGGCGACGTGGGAACTTGCAGTGAACAGAAGAGGATGTTAACTTCTCTCATCCCTGAATTCAACCCACCAGAGCCATCATCAGTCTCTGCAGCGGCGCCTATGCCGTGTATCCCAGCAACTCTGTCATCAGAACCACTTCATACTTCCGAACTGAGGCCTGACAGCTTAGCAATTCCCGAGCTTTCCAAGGAAGGAGGAACAATTGCAGAGGTTCCTAAGCAAGATATGGCAATAGCAGAAGCTCCCAGAGAGGCAGCTTCTGTTTCCAATAGCCATGAGAGGAAGTTGCCGGTTGTTAAGATTAAAGTCAGATCATCTGCTGCTACAAGTAGAGCAGATGCGGATAATCTAACCACTGAAAGATCTCATGCTGCACCTCGTGAAACGGATGTTGGTCCTACTAGTTCTGTTTCTGTTGATGCGCCCCAAAGAAATATTGCTGAGGCTACGAGTATCAGCAACCATGTTCTGGAGGAGGTTAACTCCTGTCACGATCGCGGGTCTCACATGACAGCCAGCATTGGCAGTGCAAAACTTGCGAGTTATGGTGATGAACTTGAGAAGGAGTTCCAGTGCACTGCTGATTCCAGTAGGGCTTTTGGACATTTTCAGCTAGAGGATCCTTCGTCATCGAGCATCATACAAGATAACAATATTGATGCTGATGCACAGAAGTATGCAAGTCTTCAGACACTTTCTTTACCACAGCATGATCATGGGTTAGCCTCTTCGCACTCTCGCCATGGGAAAAAGGAAAAGAAGAAAGATAAAGAAAAGAAACATAAACGAGAAAGTCACAAAGAACATCGCAACGATCCTGAATACATCGAGCGCAAACGATTGAAGAAAGAGAAGAAACAAAAAGAAAAAGAGATGGCAAAGCTATTGAATGAAGAGGTGAAGCCACTGCCTCTAGCAATGCCTCGTATAAAAGAACCACCAACCAAGTCAACACCTGTGCAGCTGGAAACAAAAGAACCTAGTGGATCGAGATTAATTGTAGGAGTTCATAGTAAGCCCGAGGCATCAGAAGGTACTACTTCTGCTGCCCCCAAACTTAGAATTAAATTCAAAAATCGGACACTGAACAATTCATAA 4083 43.96 MAKPRKPKNTDDAKPPDNSGAVVRHQKLCLSIDIDKRRVYGFTELEIAVPDIGIVGLHAENLGIGSVSVDGDPTEFEYYPRPQHVESEKSFKAVSSPSSAADAAGSIYLSSIEKELIPNLLINCCKAFKSGSEQQDQPFLENGVQPAEEDKQNIRLVRIDYWVEKSEVGIHFYNHMAHTDNQIRRARCWFPCMDDGLQRCKYDLEFTVSQNLVAVSNGILLYQVLSKDNPPRKTYVYRVDIPVNAHWISLAVGPFEILADHQNGLISHMCSPVNSLKLKHTVEFFHSAFSCYKDYLLVDFPFGSYKQIFIEPEITVSSACLGVSMCIFSSHLLFDEKIIDQTIDTRIKLAYALARQWFGIYITPEAPNDEWLLDGLAGFLTDLFIKKNLGNNEARYQRYKANCAVCRADDSGLTTLSSSSACKDLYGTQHIGIYGKIRSWKSVAILQMLEKQMGPESFRKILQNIVSRAKDTTSTSHSLSTKEFRQLANKIGNLERPFLKEFFPRWVESCGCPLLRMGFSYNKRKNMVEMAVSRECTVTPATSVENRDSDAGWPGMMSIRIYELDGVFDHPVLPMTGESWQLLEIQCHSKLAARRLQKTKKGSKADGSDDNADIPALDVRSSVESPLLWLRADPEMEYLAEIHFHQPVQMWINQLEKDKDVIAQAQAITTLEMLPQPSFSVVNALNNFLRDPKAFWRVRIEAALAMAKTASEDTDWAGLLNLIKFFKSQRFDADTGLPKPNEFRDFPEYFVLEAIPHAVAMVRATDQKSPREAVEFVLQLLKYNDNNGNPFSDVFWLAALVQSVGELEFGQQSILFLASLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGLLSLDRIFELIRPFRDFKSMWQVRIEATRALLDLEYHCNGIDAALLLFIKYLEEENSLRGQVKLGVHVMRLCQIMRRSDSNDVVNNDTLVALLLLLEGHMAFNNVHLRHYLFCILQVLAGRPPTLYGVPREYKTLHMGDVGTCSEQKRMLTSLIPEFNPPEPSSVSAAAPMPCIPATLSSEPLHTSELRPDSLAIPELSKEGGTIAEVPKQDMAIAEAPREAASVSNSHERKLPVVKIKVRSSAATSRADADNLTTERSHAAPRETDVGPTSSVSVDAPQRNIAEATSISNHVLEEVNSCHDRGSHMTASIGSAKLASYGDELEKEFQCTADSSRAFGHFQLEDPSSSSIIQDNNIDADAQKYASLQTLSLPQHDHGLASSHSRHGKKEKKKDKEKKHKRESHKEHRNDPEYIERKRLKKEKKQKEKEMAKLLNEEVKPLPLAMPRIKEPPTKSTPVQLETKEPSGSRLIVGVHSKPEASEGTTSAAPKLRIKFKNRTLNNS 1360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29949738 29971519 - CcPI632755_01g017190.1 Cco01g1719 170581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1719 1360 MobiDBLite consensus disorder prediction 1260 1292 - -
Cco01g1719 1360 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 1297 IPR037813 GO:0000976(PANTHER)|GO:0003682(PANTHER)|GO:0005669(PANTHER)|GO:0005669(InterPro)|GO:0006367(PANTHER)|GO:0016251(PANTHER)
Cco01g1719 1360 Pfam Peptidase family M1 domain 284 481 IPR014782 GO:0008237(InterPro)|GO:0008270(InterPro)
Cco01g1719 1360 FunFam Transcription initiation factor TFIID subunit 260 511 - -
Cco01g1719 1360 SUPERFAMILY ARM repeat 446 979 IPR016024 -
Cco01g1719 1360 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 270 516 - -
Cco01g1719 1360 MobiDBLite consensus disorder prediction 1124 1138 - -
Cco01g1719 1360 MobiDBLite consensus disorder prediction 1232 1347 - -
Cco01g1719 1360 MobiDBLite consensus disorder prediction 1 20 - -
Cco01g1719 1360 Gene3D Neutral Protease Domain 2 259 511 IPR027268 -
Cco01g1719 1360 Coils Coil 1271 1296 - -
Cco01g1719 1360 Gene3D tricorn interacting facor f3 domain 21 253 IPR042097 -
Cco01g1719 1360 MobiDBLite consensus disorder prediction 1239 1259 - -
Cco01g1719 1360 CDD M1_like_TAF2 25 507 - -
Cco01g1719 1360 Gene3D - 643 923 IPR011989 -
Cco01g1719 1360 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 12 254 IPR042097 -
Cco01g1719 1360 MobiDBLite consensus disorder prediction 1099 1138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1719 K03128 - - csv:101210662 2475.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g367 . . . . . . . . Cmo13g01082 . . . . . . Cpe20g00107 . . . . . . . . . . . . . . . Cone2ag0646 . . . Lsi02g00164 Csa01g00648 Chy12g01454 Cme12g01894 . . . Bda14g00912 . Bpe15g00546 Bma03g00887 . . . . Cma13g01041 . Car13g00873 . . . Bhi08g01209 . . Lac10g0216 . . . Cla04g01110 Cam04g1162 Cec01g1673 Cco01g1719 Clacu04g1190 Cmu04g1170 Cre01g1467 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010321 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32