Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1728 ATGTCTTCTCTCCCATTTGCTTTCTTCTTCCTCCTCCTCTCCTTCCATTTCTTCTCGGCAATTAGCATCGACTTCCTCGTCGGCGATGAGGATGGCTGGGCAGTCCCTAAACCAAAAGAAGCTGACAAATACAACAAATGGGCTTCCCACAACAGATTCAATATCGATGACACTGTCCATTTCAAGTACGAGAAAGATTCGGTGATGATGGTGACAGAGGAAGAGTACAAACAGTGTTTTTCTTCAAAGCCTCTGTTTTATGAGAACAATGGTGATAGTGTTGTGAAACTTGATAGAGCCGGTTTGTTCTATTTCATTAGTGGAGTTTCAGGGCATTGTCAGAAAGGCCAAAGAATGATAATCAAAGTGTTGGAACCTATAAATCCTCCTCACCCACCAACTGCTCCACCAAATAACAAGAATGCTGCAGCAGCCTCTTCTAATTTGCTCTCTGTTTCATCTTCAATCTTGGGAGTGTTCTTGATGTTGTTCTTTGCTCTGTTTCTGTCCATTTGA 516 42.44 MSSLPFAFFFLLLSFHFFSAISIDFLVGDEDGWAVPKPKEADKYNKWASHNRFNIDDTVHFKYEKDSVMMVTEEEYKQCFSSKPLFYENNGDSVVKLDRAGLFYFISGVSGHCQKGQRMIIKVLEPINPPHPPTAPPNNKNAAAASSNLLSVSSSILGVFLMLFFALFLSI 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30010716 30011333 + CcPI632755_01g017280.1 Cco01g1728 170590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1728 171 Gene3D - 22 126 IPR008972 -
Cco01g1728 171 ProSiteProfiles Phytocyanin domain profile. 23 125 IPR003245 GO:0009055(InterPro)
Cco01g1728 171 PANTHER BLUE COPPER PROTEIN 16 133 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cco01g1728 171 Pfam Plastocyanin-like domain 40 117 IPR003245 GO:0009055(InterPro)
Cco01g1728 171 CDD OsENODL1_like 24 124 IPR041846 -
Cco01g1728 171 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Cco01g1728 171 FunFam Early nodulin-like protein 1 22 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1728 Cco-Chr1:30010716 Cco09g2159 Cco-Chr9:35977729 4.30E-32 dispersed
Cco01g1728 Cco-Chr1:30010716 Cco06g0614 Cco-Chr6:6691531 3.80E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1728 - - - 0.0