Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1729 ATGCTGCCGTTAGACTCCCCTCTCATCTTTCTCACTCTCTCGCAGACGCTTTCGCCAGGCCACTCGCCGCCGCTCCCCCCAGACACCGTCGTCTGCCGTCGGTCAGGCCACCCCGCCGCTCCAGCCACGTCAATTCGCCGGTTGTCGTTCGTGGCCGCCTGCCGTCACGTCCGAGGCATCAACTTCTTCAATTTCATTACTTTTATTAGAAATTCTTACGAGAATCATCACTTGGAAGTCAGTGCCATGGTCGTACTGGATGAGAAAGTTCCTTCCTCATCAGAGGTAGAGGCAATGAACAAAAGGCGCAAGAGGAAGAGACCCAAGAAAAATCTTCCTTCAACGGGTGCGGAAGAATCGGAACTTCAAAATCCAATGAAAGGTGAAGAAGAAGGGGAAGGAGATGCTGAAGGCAATGTATCAGTGAAGAAAGTGGAAAAAGACGAGAAGATGAAGAAGAAGAGGAAGACAAAAATGAAGAGGAAGGACGAGTTGGACGAGGAAAGACATGAAAATGCTAACGATGACGAGGGCGAGGATGGCGTGGAAGGGAAGGTTGAGGAGGATGAGGAGAAAGAGAAGGAGGACAAGAAGTTTAAGACTGTTGGATCAGGAATTATGAGTACTGTTTCATTTGATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCCAGAGCAATTCCGCCTTCTCTAGTTGGGAAAGATATCCTTGGAGCTGCAAGGACAGGATCCGGGAAAACTCTTGCCTTTCTTATACCAGCTGTGGAGCTCCTACATCACATCTGCTTTACTCCTCGTAATGGAACTGGTGTTATAGTTATTTGCCCAACACGGGAGCTTGCAATGCAGACACATGAAGTGGCAAAAGAGCTTCTCAAATATCATTCACAGACACTTGGCCTTGTTACTGGTGGTTCTAGCCGACAAGCTGAGGCTGATCGTATTACAAAGGGGGTTAATCTATTAATAGCAACCCCTGGTCGACTTCTTGACCATCTTCAGCATACCAAGAATTTTATGTTTAAAAATTTGAAGTGCCTCATAATTGATGAAGCAGACAGGATATTGGAAACCAATTTTGAGGAGGAAATGAAACAAATTATAAAGCTTCTACCAAAGAATAGGCAGACTGCTTTATTCTCAGCAACCCAAACACAAAAGGTTGAAGATCTTGTTCGCTTGTCGTTTCAGTCAACTCCTATTTATATTGACGTGGATGATGGAAGAACAAAGGTCACCAACGAGGGGTTGCAACAAGGTTACTGTGTTGTGCCTAGTTCAAAAAGATTCATTCTTCTATATTCCTTCTTGAAGAGAAATTTATCTAAGAAAGTAATGGTCTTCTTCTCGTCTTGTAACTCTGTAAAATTCCATGCGGACCTTTTTAGATACATTAAGGTCGACTGCATGGATATCCATGGAAAGCAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTTCCTTCATCAAGGCCGAGACTGGGATCCTACTATGTACTGACGTTGCTGCACGTGGACTTGACATTCCCGCCGTTGATTGGATTGTGCAGTACGACCCTCCAGATGAACCCAAGGAATATATTCACAGAGTTGGCCGAACAGCTCGAGGCGAAGGTAGCAGAGGAAATGCCCTACTTTTCTTGATGCCTGAAGAGCTTCAATTTCTTCACTATCTAAAGGCAGCAAAAGTTCCCGTCAAAGAGTATGAGTTCAGTGATAAGAAACTGGCCAATGTGCAATCTCATCTGGAGAAACTGGTGGGCAGCAATTATTATTTGAACAAGTCGGCTAAGGATGCTTACAGATCCTATATATTAGCTTACAATTCACATTCTATGAAAGATATTTTCAATGTCCACCGCCTTGATCTCCAGGGTATTGCTGCTTCATTCTGCTTTTCCAACCCTCCAAAGGTCAACCTTAACATTGACAGCAGTGCTTCAAAATTCAGGAAGAAAACGCGTAAAGTAGAAGGGAGCAGCAACAGATTCATTAAGAGCAATCCTTATGGGAGGAAGAATGAGGGAGATGAGAGACAGTTTGTAAGATACTAG 2094 44.36 MLPLDSPLIFLTLSQTLSPGHSPPLPPDTVVCRRSGHPAAPATSIRRLSFVAACRHVRGINFFNFITFIRNSYENHHLEVSAMVVLDEKVPSSSEVEAMNKRRKRKRPKKNLPSTGAEESELQNPMKGEEEGEGDAEGNVSVKKVEKDEKMKKKRKTKMKRKDELDEERHENANDDEGEDGVEGKVEEDEEKEKEDKKFKTVGSGIMSTVSFDSLDLSEKTLRAIKDMGFEHMTQIQARAIPPSLVGKDILGAARTGSGKTLAFLIPAVELLHHICFTPRNGTGVIVICPTRELAMQTHEVAKELLKYHSQTLGLVTGGSSRQAEADRITKGVNLLIATPGRLLDHLQHTKNFMFKNLKCLIIDEADRILETNFEEEMKQIIKLLPKNRQTALFSATQTQKVEDLVRLSFQSTPIYIDVDDGRTKVTNEGLQQGYCVVPSSKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHADLFRYIKVDCMDIHGKQKQQKRTSTFFSFIKAETGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGSRGNALLFLMPEELQFLHYLKAAKVPVKEYEFSDKKLANVQSHLEKLVGSNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQGIAASFCFSNPPKVNLNIDSSASKFRKKTRKVEGSSNRFIKSNPYGRKNEGDERQFVRY 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30012581 30017787 - CcPI632755_01g017290.1 Cco01g1729 170591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1729 697 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 362 370 IPR000629 -
Cco01g1729 697 MobiDBLite consensus disorder prediction 683 697 - -
Cco01g1729 697 Pfam Domain of unknown function (DUF4217) 603 652 IPR025313 -
Cco01g1729 697 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 210 238 IPR014014 GO:0003724(InterPro)
Cco01g1729 697 SMART DUF4217_3 591 654 IPR025313 -
Cco01g1729 697 Pfam Helicase conserved C-terminal domain 446 549 IPR001650 -
Cco01g1729 697 CDD DEADc_DDX18 221 418 IPR044773 GO:0003724(InterPro)|GO:0005524(InterPro)
Cco01g1729 697 MobiDBLite consensus disorder prediction 675 697 - -
Cco01g1729 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 566 IPR027417 -
Cco01g1729 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 417 IPR027417 -
Cco01g1729 697 MobiDBLite consensus disorder prediction 123 148 - -
Cco01g1729 697 MobiDBLite consensus disorder prediction 91 199 - -
Cco01g1729 697 Pfam DEAD/DEAH box helicase 234 405 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cco01g1729 697 CDD SF2_C_DEAD 431 561 - -
Cco01g1729 697 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 430 600 IPR001650 -
Cco01g1729 697 Gene3D - 139 420 IPR027417 -
Cco01g1729 697 PANTHER RNA HELICASE 211 597 - GO:0000463(PANTHER)|GO:0005730(PANTHER)
Cco01g1729 697 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 241 416 IPR014001 -
Cco01g1729 697 MobiDBLite consensus disorder prediction 170 186 - -
Cco01g1729 697 Gene3D - 427 672 IPR027417 -
Cco01g1729 697 FunFam RNA helicase 427 657 - -
Cco01g1729 697 SMART ultradead3 229 434 IPR014001 -
Cco01g1729 697 SMART helicmild6 470 551 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1729 K13179 - - csv:101209673 1018.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1637 Cco-Chr1:29095977 Cco01g1729 Cco-Chr1:30012581 7.90E-286 dispersed
Cco01g1729 Cco-Chr1:30012581 Cco10g0511 Cco-Chr10:6126495 6.30E-90 dispersed
Cco01g1729 Cco-Chr1:30012581 Cco01g0302 Cco-Chr1:2957550 4.40E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51