Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1737 ATGGGGAGTGACAGCGAAGCAGAGAAGTCGCATCAAAAGGACAAAGAAAAGGAGAAGAAGAAGCGGTTAGCTCTTGCACCAATTGCCAAACCCCTTGCCGGCAAAAAGCTCTGCAAGCGTACCCTCAAGCTTGTTCGTAAAGCTGCTGAGTACAAGTGCTTGAAGCGGGGAGTAAAGGAGGTTGTCAAAAGCATAAGGCGCGGTCAAAAAGGATTGTGTGTAATAGCTGGTAACATTTCCCCCATTGACGTGATCACTCATGTTCCAATCTTATGTGAAGAGTCAGACATTCGTTACGTGTATGTTCCATCCAAGGAAGATCTTGCCAATGCGGGGTCGACCAAGAGGCCAACATGTTGTGTGCTGGTACAAACTAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAGGCTGACTATGACCAAGTTGTTGCTGAAGTATCAGAACTTACTATCCACGATCCTTTTCATTTTACATCTAATCAGGGGGAAATGGGTTGCTCCTTTTCTGGGTTGAATGCTCTGTACGACGCTGTCAATGGTGGTGGAGACATTTGGATCAACGAAAATCGGTTTAGGATCGTCAGGCAGCTTGGAGAAGGTGGGTTCGCCTTTGTGTTTTTGGTCAAAGAGGTTAGTTCCGATTCTTCTTCACCCTCTGGTGGCGGTCTCGCCAAGAAATTGAAGGACCCATCTCGTCTTTCCGGTGATGGAACTTATGCTTTGAAAAAGGTTCTAATTCAGAGCAGTGAACAATTGGAGCTGGTGAGGGAGGAGATTCGTGTTTCGTCGCTTTTTAGTCATCCCAATCTACTTCCACTTCTTGACCATGCTATAATTGCAGTTAAGTCATCTACTGATGGATCTATGAAACATGAAGCATACTTGTTGTTTCCAGTTCACTTGGATGGAACATTACTGGACAATGCCCAGACAATGAAGGCTAAGAAGGAATTTTTTTCTACATTGGATGTTCTGGAGATATTTCGCCAGCTTTGTGCAGGGCTTAAGCATATGCACAGTAATGAACCTCCTTATGCACACAATGATGTGAAACCTGGTAATGTTCTTTTAACTCATAGAAAAGGGAAGTCACCTCTCGCAATATTGATGGATTTTGGTAGTGCTCGACCTGCTAGAAAAGAAATCCGTTCTCGTTCAGAGGCACTCCAATTGCAGGAATGGGCATCTGAGCATTGTTCTGCACCTTTCCGAGCACCGGAGCTGTGGGATTGTCCAAGCCATGCTGACATTGATGAGAGAACTGATATCTGGTCATTGGGATGTACTTTGTATGCAATAATGTATGGGTTATCTCCATTTGAGTATGCACTTGGAGAATCTGGTGGAAGCCTTCAACTAGCAATTGTAAATGCACAAATCAAATGGCCAGCAGGGCCTAATCCTCCATATCCTGATGCTCTCCACCAGTTTATAAAATGGATGCTTCAGCCCCAGGCTGCAGTTCGACCTCGGATCGACGATATCGTCCTTCATGTTGACAAGTTGATTGCAAAGTTTTCTAATTAG 1542 44.68 MGSDSEAEKSHQKDKEKEKKKRLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADYDQVVAEVSELTIHDPFHFTSNQGEMGCSFSGLNALYDAVNGGGDIWINENRFRIVRQLGEGGFAFVFLVKEVSSDSSSPSGGGLAKKLKDPSRLSGDGTYALKKVLIQSSEQLELVREEIRVSSLFSHPNLLPLLDHAIIAVKSSTDGSMKHEAYLLFPVHLDGTLLDNAQTMKAKKEFFSTLDVLEIFRQLCAGLKHMHSNEPPYAHNDVKPGNVLLTHRKGKSPLAILMDFGSARPARKEIRSRSEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIMYGLSPFEYALGESGGSLQLAIVNAQIKWPAGPNPPYPDALHQFIKWMLQPQAAVRPRIDDIVLHVDKLIAKFSN 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30064708 30070876 - CcPI632755_01g017370.1 Cco01g1737 170599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1737 513 CDD STKc_16 195 509 - -
Cco01g1737 513 ProSiteProfiles Protein kinase domain profile. 196 508 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1737 513 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 42 126 IPR004038 -
Cco01g1737 513 SUPERFAMILY Protein kinase-like (PK-like) 189 503 IPR011009 -
Cco01g1737 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1737 513 PRINTS High mobility group-like nuclear protein signature 27 40 IPR002415 GO:0003723(InterPro)|GO:0005730(InterPro)
Cco01g1737 513 PRINTS High mobility group-like nuclear protein signature 57 67 IPR002415 GO:0003723(InterPro)|GO:0005730(InterPro)
Cco01g1737 513 PRINTS High mobility group-like nuclear protein signature 40 55 IPR002415 GO:0003723(InterPro)|GO:0005730(InterPro)
Cco01g1737 513 PRINTS High mobility group-like nuclear protein signature 101 113 IPR002415 GO:0003723(InterPro)|GO:0005730(InterPro)
Cco01g1737 513 MobiDBLite consensus disorder prediction 1 21 - -
Cco01g1737 513 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 169 510 IPR052239 GO:0004674(PANTHER)|GO:0005737(PANTHER)
Cco01g1737 513 Gene3D Phosphorylase Kinase; domain 1 177 303 - -
Cco01g1737 513 FunFam H/ACA ribonucleoprotein complex subunit NHP2 22 154 - -
Cco01g1737 513 Pfam Protein kinase domain 242 503 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1737 513 SMART serkin_6 196 508 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1737 513 ProSitePatterns Protein kinases ATP-binding region signature. 202 231 IPR017441 GO:0005524(InterPro)
Cco01g1737 513 SUPERFAMILY L30e-like 21 132 IPR029064 -
Cco01g1737 513 Gene3D - 21 156 IPR029064 -
Cco01g1737 513 Gene3D Transferase(Phosphotransferase) domain 1 306 511 - -
Cco01g1737 513 PRINTS Ribosomal protein L7A/RS6 family signature 73 86 IPR018492 -
Cco01g1737 513 PRINTS Ribosomal protein L7A/RS6 family signature 54 68 IPR018492 -
Cco01g1737 513 PRINTS Ribosomal protein L7A/RS6 family signature 99 113 IPR018492 -
Cco01g1737 513 PRINTS Ribosomal protein L7A/RS6 family signature 89 99 IPR018492 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1737 K08856 - - csv:101208936 679.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1737 Cco-Chr1:30064708 Cco10g1249 Cco-Chr10:25266009 8.70E-28 dispersed
Cco01g1737 Cco-Chr1:30064708 Cco06g1724 Cco-Chr6:27751066 3.60E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g402 Blo04g00807 . . . . . . . . Cmo18g00014 . . . . . . . . . . . . . . . . . . . . . Cone2ag0778 . . Cone19ag0021 Lsi02g00149 Csa01g00634 . . . . . Bda14g00900 . Bpe15g00558 Bma03g00875 . . . . Cma13g01052 Cma18g00013 Car13g00885 . . . . . . . . . . Cla04g01124 Cam04g1178 Cec01g1690 Cco01g1737 Clacu04g1206 Cmu04g1185 Cre01g1483 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002165 2 3 1 2 1 2 2 2 2 2 1 2 2 2 2 4 2 2 4 2 2 2 2 2 3 1 2 5 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86535 PF00069 Pkinase 2.00E-28 CL0016 Cco PK