Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1742 ATGGCAGTGAGCAAAATAAACTTCTCTCCCACTCATCCTTTCATCGACGATGGCAAGATTGAGAGTGAGAACGGTGGCCCCTTTGGCCAAGTATTGTTGGTCGACGTTCCTCGGCGATGCCGTCTGAACTTCTTCGCCGGAATTAATCGATCGGTCCGGCCACTCTGCCACTCATCGACGATGGCGGACGACTCAATTAACTCCGTCGCCTCCCCAGAAGATCCCTTAAAAGCCCTAATTTATTGTCCTTCCGCGAGTACGAAATCGGGGGTCGAAAACGAATCTGTAGGTGGATTTGATGAAAATCAGCCGCCGATAGACGATAATCCTTCTTCTATCTGTGATAATCCTTCTTCTATCTGTGTAATTTGCTTGTCTGATGATGGAAAAGCGGAGAGAGGTGAGCTTGATTCTTGTGACCATTATTTTTGCTATGTCTGCATCATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGCAAGGGTAGGTTCACTGTTGTTCATAGAATTTCGAAGGATGCCTGTCGTCTCCGTGAACGAATTGTTAATATTCCATTGCGGAATCAGGCTCACTCTGCTTCTGGAAATACTAGGATTAGGGATCCATATGCAGAAACGTGTTGCACTGTGTGCAAGGGTATGGAAGATGAAGGTCTCATGTTACTCTGTGATCTCTGTGATTCAGCTGCTCATACTTATTGTGTCGGCCTTGGTACTAATGTACCCGAAGGTGATTGGTTTTGCCATGATTGCACTATCTCCAGGACTCAACACAAACATACTGATACTGAATTGGATACTAGTTGCAACGATCAAAATCAAACAGCAACAGTTGAAGCACACATTGCCATTTCCGAAATAGTAAAAGAATCATTGCCTGGTCGTGGTGGTAAAGCTGCGGGAACAAGTGCAAGAACATTACATCGATGTCGCAACATCCATAGCCATATAAGGGCATTACGTGATAATTGGGATGCTTTACGAAGGGGTTCACTGAACTTTCCCAGTAGCAGCTCATCGAGCTATTGTGGCAACAGTTCCAAACGAGATACTGGTGGTGCTGCACTAAACAACCAAACGGATGAACCCCATTTTTCAACAGCCATTAGCTTGCAGGCCACCTCTGGACCAGAGTGTAACGGAAGCTCTTATGATATTGAGAAGGCTTGGCGGATGATGGAAATTGCAAAGGCAACGGCTATATGTGCGGGAGATCAAACCTTGAGACATCCTACAAGCAGACAATTGAGCACAAAAACAAAACATTCTCATACAGCGAAAGGTCAACAGTACAAAATTAAGAAGCCAAATGAGCCAGCCAAGCATACGAAGGAATTGGGAAAGCAAAGATTGCTCGAGTTGGATAAGCAACTGTGTCATCCAGTAGCAAGTAAGAAGAATAAAGCTTCTCATGAGTTTTTTCCTACAAATTCATCCAGTTATGGAGAATCTTCCTTGGGCAATATGGTGACTCATCGAGATGATTTCAAACATGAAAATAGAAGAAAGCCATCAAACAAAATGGTGGGTGAACTCTCATCATCCTCCACAATGACACAAGCCTCGGAAAAACGCCATCCTGCTCGTGAGGCTGGCAATGATCAGGATGTCAAAAGTGAGATACGAACACTGGTCAAGATCAATCTAAAACTCCTAAGCCAAGACAAAAATTTGGGATATGAAGGATACAAGGAAGTTGCAAGGCTTGCAACTCACACCATCATGGCAGGATGTGGTTTAGAACCCCCTCCAAAACCCGGCAAGCGATTCTTATCGTGCTCGGTTTGCAGACATACACAAGAAGAAATCCAGCATCTTCACAGGTCGACTCTGATGCCAGATTCTTGCAGGGAATGCTTCTTGGCGTTTGTGAAAGATGTTGTTAATGCCATAATGTTAGAAAAACTAGTGTGCTTTGCTTGTGAAGTCTCTGTGAAAGCACTCAGAAAAGCACATGCGACAATATCACGTGACTTTCGAGAACGTCAGCAGAAGATGGACATGGACATGGACAGTGGCTTTTTGTTGCACACGTGCCAAGCGTCAGGAGAGTTAAAAGGGTGTGTTTGGGTTTGGGAATGGCAGCACGTGGGAAAGGAGGCGGCAGTGGGCAGGGCAGGGAGGGATGGGCACACGTGA 2142 45.42 MAVSKINFSPTHPFIDDGKIESENGGPFGQVLLVDVPRRCRLNFFAGINRSVRPLCHSSTMADDSINSVASPEDPLKALIYCPSASTKSGVENESVGGFDENQPPIDDNPSSICDNPSSICVICLSDDGKAERGELDSCDHYFCYVCIMEWARIESRCPACKGRFTVVHRISKDACRLRERIVNIPLRNQAHSASGNTRIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGTNVPEGDWFCHDCTISRTQHKHTDTELDTSCNDQNQTATVEAHIAISEIVKESLPGRGGKAAGTSARTLHRCRNIHSHIRALRDNWDALRRGSLNFPSSSSSSYCGNSSKRDTGGAALNNQTDEPHFSTAISLQATSGPECNGSSYDIEKAWRMMEIAKATAICAGDQTLRHPTSRQLSTKTKHSHTAKGQQYKIKKPNEPAKHTKELGKQRLLELDKQLCHPVASKKNKASHEFFPTNSSSYGESSLGNMVTHRDDFKHENRRKPSNKMVGELSSSSTMTQASEKRHPAREAGNDQDVKSEIRTLVKINLKLLSQDKNLGYEGYKEVARLATHTIMAGCGLEPPPKPGKRFLSCSVCRHTQEEIQHLHRSTLMPDSCRECFLAFVKDVVNAIMLEKLVCFACEVSVKALRKAHATISRDFRERQQKMDMDMDSGFLLHTCQASGELKGCVWVWEWQHVGKEAAVGRAGRDGHT 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30183080 30192385 + CcPI632755_01g017420.1 Cco01g1742 170604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1742 713 ProSiteProfiles Zinc finger PHD-type profile. 206 255 IPR019787 -
Cco01g1742 713 PANTHER F18C1.6 PROTEIN 119 636 - -
Cco01g1742 713 ProSitePatterns Zinc finger RING-type signature. 139 148 IPR017907 -
Cco01g1742 713 MobiDBLite consensus disorder prediction 508 523 - -
Cco01g1742 713 Pfam Ring finger domain 121 162 IPR001841 -
Cco01g1742 713 SUPERFAMILY FYVE/PHD zinc finger 196 255 IPR011011 -
Cco01g1742 713 SMART ring_2 209 252 IPR001841 -
Cco01g1742 713 SMART ring_2 121 161 IPR001841 -
Cco01g1742 713 MobiDBLite consensus disorder prediction 416 430 - -
Cco01g1742 713 SUPERFAMILY RING/U-box 116 168 - -
Cco01g1742 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 180 IPR013083 -
Cco01g1742 713 MobiDBLite consensus disorder prediction 411 442 - -
Cco01g1742 713 MobiDBLite consensus disorder prediction 495 538 - -
Cco01g1742 713 MobiDBLite consensus disorder prediction 524 538 - -
Cco01g1742 713 ProSiteProfiles Zinc finger RING-type profile. 121 162 IPR001841 -
Cco01g1742 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 260 IPR013083 -
Cco01g1742 713 MobiDBLite consensus disorder prediction 335 362 - -
Cco01g1742 713 SMART PHD_3 208 253 IPR001965 -
Cco01g1742 713 Pfam PHD-finger 209 252 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1742 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0175 Cco-Chr1:1657640 Cco01g1742 Cco-Chr1:30183080 4.10E-10 dispersed
Cco01g1742 Cco-Chr1:30183080 Cco03g1818 Cco-Chr3:32810658 3.20E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58646 PF00628 PHD 3.60E-09 CL0390 Cco TR