Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1745 ATGTGTCCCCCCTTCCGCCGCATTCCTCCATCGTCCTTCGCCGCTGCCTCTGACTTTCCCCCTTTTCAAACCCTAATTCATCCTCGCCACTTCTGCAAGACCTGTTGCAGCTACTGGACCCTCGGCGGCCTCCTCCGCAATTTTCCCGTTGGCAGCGGAACTTGCAGATTGAAAAAGAATTCCAAATCCAAGGTTGCGATTATTAGAGATTCGCCGCCTTGGAACTCTGCTGTTCTTCACTCTGATTTAGAAATGTTTTCGACTCCGTTGAAGTTGAATCAGGCGAGTGATTGGTGTGGTTGGATTGAGAATGGAAGGGAATTGAATGGTGAGATTGTGGGTGCGGCAGGGGATTCGGCGGTGGAGGGATTTGGATCGTCGGATCATCTGGCGATAAGTGGTGGAAATGAAGGAATGGTTGAGATTTCCGGCGGCGTCGCCGTCGATGGAGGTTTTTGGTACTTCCCGAAGGGTTTTCCTTTCCTTTCATTTCCTTCAAATTTCTTCCCTAAAATTTCTCAAGATTTCATCTTCTCAACCATGTTCGAGCCCCAACATTTCGTCGATTTGCAAGACGATTCTGCTTTCGGCGACCAGAATTCATGGCTTTCCGGCGACCATAACTCCTCCCCGGCTCGCCGCCTCACTCACTCATCACTCACCGACGCATCTATTTCAACTTCGTCAACTACTGCTGCCGCCGCCGCTAATGGCAATGTCGATCGTGAACTCTTCAACAATCTCGTCGCCATCGTACCCCTCGTTCAGTCTCTTATTGATCGGAAAGCGAGCAGTTCATTCACGAAGCGGGGTTCAATGATTTACACTAAGACGCCTTCTAGAGAATCATTACACAGGAAAATTGAACAGAAGGGTAGGAATAATGGCCAATCTATTCCAACCAAGAAGAAAAAGGATCACGGGGACAAGGAACAGGGTCATAATGTTGATAATAATGCTGATGCTGATGGCTTTTCAATGTTCTCCTCAAGTTCTTTGGTCTCTGAAAGGGACAAAGAAGAGCTAATCACATTGCGAGAACAAGTGGAAGATCTGCAAAAGAAATTGCTTGAAAAGGATGAACTTCTAAAATCAGCAGAGATGTCAAAGGACCAAATGAACAATGTTTATGCAAAACTTGATGCCTTGAGTCTCCAGTCTGCAGAGAAGGATTCTACGATAAAGTCTATTCATTCCCAACTTTCAGATGCAAAGATTAAGCTTGCAGATAAGCAAGCTGCCTTGGAAAAGATACAATGGGAGGTAATGACATCAAATTCGAAAGTAGAAGAACTTCAAGAACAGCTAAAGTCCTCACAAGGAGATGTTTCATCGTTTATGCTGTTACTTGAAAGCTTGACAAAGAATGATTGCAATGATCGTCTCAAAGATTATAGTCTTTCATTGTATCTCCCTGAGAGCTGTCCTTACATTGATGATTTGGATGACGTGGAAATGGAGAAAATGGAAGAAGCAAGAAAAGCTTATGTAGCTGCTGTTGCTACTGCAAAGGCAAGGCAAGATGAAGAATCTATTGCTGCTGCTGCAACAGCAAGATCACATCTCCGATCATTCCTTTTCAGAACATAA 1590 44.97 MCPPFRRIPPSSFAAASDFPPFQTLIHPRHFCKTCCSYWTLGGLLRNFPVGSGTCRLKKNSKSKVAIIRDSPPWNSAVLHSDLEMFSTPLKLNQASDWCGWIENGRELNGEIVGAAGDSAVEGFGSSDHLAISGGNEGMVEISGGVAVDGGFWYFPKGFPFLSFPSNFFPKISQDFIFSTMFEPQHFVDLQDDSAFGDQNSWLSGDHNSSPARRLTHSSLTDASISTSSTTAAAAANGNVDRELFNNLVAIVPLVQSLIDRKASSSFTKRGSMIYTKTPSRESLHRKIEQKGRNNGQSIPTKKKKDHGDKEQGHNVDNNADADGFSMFSSSSLVSERDKEELITLREQVEDLQKKLLEKDELLKSAEMSKDQMNNVYAKLDALSLQSAEKDSTIKSIHSQLSDAKIKLADKQAALEKIQWEVMTSNSKVEELQEQLKSSQGDVSSFMLLLESLTKNDCNDRLKDYSLSLYLPESCPYIDDLDDVEMEKMEEARKAYVAAVATAKARQDEESIAAAATARSHLRSFLFRT 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30221941 30226941 + CcPI632755_01g017450.1 Cco01g1745 170607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1745 529 PANTHER PROTEIN MICROTUBULE BINDING PROTEIN 2C 185 529 IPR040289 GO:0008017(InterPro)|GO:0010497(InterPro)
Cco01g1745 529 MobiDBLite consensus disorder prediction 199 221 - -
Cco01g1745 529 Pfam Dof domain, zinc finger 27 58 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco01g1745 529 Coils Coil 335 369 - -
Cco01g1745 529 Coils Coil 401 435 - -
Cco01g1745 529 MobiDBLite consensus disorder prediction 299 317 - -
Cco01g1745 529 Coils Coil 486 506 - -
Cco01g1745 529 MobiDBLite consensus disorder prediction 270 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1745 K28094 - - csv:101207962 538.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1745 Cco-Chr1:30221941 Cco04g1410 Cco-Chr4:29510833 3.30E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g425 Blo04g00802 . . . . . . . Cmo13g01101 . . . . . . Cpe20g00092 . . . . . . . . . . . . . . . Cone2ag0790 Cone16ag0228 . . Lsi02g00142 Csa01g00626 Chy12g01475 Cme12g01916 . . . Bda14g00894 . Bpe15g00564 Bma03g00869 . Sed01g2279 . . Cma13g01057 . Car13g00892 . . . Bhi08g01054 Tan05g2323 Cmetu12g0469 Lac10g0188 Hepe07g2440 . . Cla04g01135 Cam04g1188 Cec01g1700 Cco01g1745 Clacu04g1214 Cmu04g1193 Cre01g1492 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006382 1 1 1 3 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58648 PF02701 zf-Dof 1.20E-09 No_clan Cco TF