Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g1749 | ATGGGGAGAGGGAGAGTGCAATTGAAGAGGATTGAGAATAAAATTAATAGGCAAGTGACTTTCTCAAAAAGAAGGTCAGGTTTATTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACAAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTATGGAGAAAATCCTTGAGCGTTATGAAAGGTATTCATATGCAGAGAGGAGACTTGTTGCAAATGATAATCAATCAAATGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCATTGAGCCTAAAAGAACTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCACTACAAGAACAAAATAACATGTTAGCTAAGAAGATAAAGGAGAAGGAGAAATTACAAGCTCAAAATCCACAAATGGAACAGCAGGAGAATAGCCCTGCCATGGAATCTTCTCCACTTCTTTTACCTCAGCCATTCCAATCTCTTAACATGAGTTGTCCATACTCAACATACGGCACCGGAGACGACGACTCTGCCGCAAATCATGACAGATCCGGTGCCCTCCTCCCACCGTGGATGCTCCGCCACCACCTTGGTGATTAA | 741 | 41.03 | MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDNQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKLQAQNPQMEQQENSPAMESSPLLLPQPFQSLNMSCPYSTYGTGDDDSAANHDRSGALLPPWMLRHHLGD | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 30238044 | 30244142 | - | CcPI632755_01g017490.1 | Cco01g1749 | 170611 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g1749 | 246 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco01g1749 | 246 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco01g1749 | 246 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco01g1749 | 246 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco01g1749 | 246 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco01g1749 | 246 | MobiDBLite | consensus disorder prediction | 181 | 200 | - | - | |
Cco01g1749 | 246 | SUPERFAMILY | SRF-like | 2 | 91 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco01g1749 | 246 | Pfam | K-box region | 84 | 172 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco01g1749 | 246 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 190 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco01g1749 | 246 | Coils | Coil | 122 | 145 | - | - | |
Cco01g1749 | 246 | Coils | Coil | 151 | 188 | - | - | |
Cco01g1749 | 246 | FunFam | MADS-box transcription factor MADS-MC | 13 | 86 | - | - | |
Cco01g1749 | 246 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cco01g1749 | 246 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco01g1749 | 246 | MobiDBLite | consensus disorder prediction | 176 | 200 | - | - | |
Cco01g1749 | 246 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco01g1749 | 246 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco01g1749 | 246 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1749 | Cco-Chr1:30238044 | Cco08g1207 | Cco-Chr8:23798980 | 3.70E-69 | dispersed | |
Cco01g1749 | Cco-Chr1:30238044 | Cco01g1750 | Cco-Chr1:30251519 | 1.10E-41 | tandem | |
Cco04g2359 | Cco-Chr4:37055786 | Cco01g1749 | Cco-Chr1:30238044 | 4.90E-30 | transposed | |
Cco01g1749 | Cco-Chr1:30238044 | Cco07g1680 | Cco-Chr7:30789828 | 7.80E-43 | wgd | |
Cco01g1749 | Cco-Chr1:30238044 | Cco08g1206 | Cco-Chr8:23785466 | 1.50E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58649 | PF01486 | K-box | 3.60E-30 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g1749 | K09264 | - | csv:101207225 | 412.149 |