Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1749 ATGGGGAGAGGGAGAGTGCAATTGAAGAGGATTGAGAATAAAATTAATAGGCAAGTGACTTTCTCAAAAAGAAGGTCAGGTTTATTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACAAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTATGGAGAAAATCCTTGAGCGTTATGAAAGGTATTCATATGCAGAGAGGAGACTTGTTGCAAATGATAATCAATCAAATGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCATTGAGCCTAAAAGAACTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCACTACAAGAACAAAATAACATGTTAGCTAAGAAGATAAAGGAGAAGGAGAAATTACAAGCTCAAAATCCACAAATGGAACAGCAGGAGAATAGCCCTGCCATGGAATCTTCTCCACTTCTTTTACCTCAGCCATTCCAATCTCTTAACATGAGTTGTCCATACTCAACATACGGCACCGGAGACGACGACTCTGCCGCAAATCATGACAGATCCGGTGCCCTCCTCCCACCGTGGATGCTCCGCCACCACCTTGGTGATTAA 741 41.03 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDNQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKLQAQNPQMEQQENSPAMESSPLLLPQPFQSLNMSCPYSTYGTGDDDSAANHDRSGALLPPWMLRHHLGD 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30238044 30244142 - CcPI632755_01g017490.1 Cco01g1749 170611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1749 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1749 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1749 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1749 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1749 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco01g1749 246 MobiDBLite consensus disorder prediction 181 200 - -
Cco01g1749 246 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1749 246 Pfam K-box region 84 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco01g1749 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco01g1749 246 Coils Coil 122 145 - -
Cco01g1749 246 Coils Coil 151 188 - -
Cco01g1749 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Cco01g1749 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco01g1749 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1749 246 MobiDBLite consensus disorder prediction 176 200 - -
Cco01g1749 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1749 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1749 246 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1749 Cco-Chr1:30238044 Cco08g1207 Cco-Chr8:23798980 3.70E-69 dispersed
Cco01g1749 Cco-Chr1:30238044 Cco01g1750 Cco-Chr1:30251519 1.10E-41 tandem
Cco04g2359 Cco-Chr4:37055786 Cco01g1749 Cco-Chr1:30238044 4.90E-30 transposed
Cco01g1749 Cco-Chr1:30238044 Cco07g1680 Cco-Chr7:30789828 7.80E-43 wgd
Cco01g1749 Cco-Chr1:30238044 Cco08g1206 Cco-Chr8:23785466 1.50E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58649 PF01486 K-box 3.60E-30 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1749 K09264 - csv:101207225 412.149