Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1753 ATGTTGTCTAACGGCGAGGTAGAATACAGGTGTAGGCTAAGTAAATCAATCAATAGTCTTGGTCCTGTTGAAAGTGAAGGATCAATTATAAATAATATGAATAAAAACATTCCTAGTCATAGTGATAGTTACAATTCTAGTTACAGTACTGTTGATGATTTAGTCGGCATTCGGAATTTCGTATATGATGACACTTTTTTAGTTAGGGATAGTAATAGCAGCAGTTATTCCATATATTTGGATATTGAAAATCAAATTTTTGAGATTGACAATGATCCTTCTTTTAACGAAGGCGTTCGAGTTATTGGCTCGTCCAACCCGGCAGCATTCATGAGTCGCTCGTTCAACTGTCCCTCGGAGACACGGTCGAGAATTCAACGTGCGGTCGCCCCTCCAACAAGAAAAGGTATAAATATGGAAACTTCTCTGCCATTTGGATCGGAGAATTTATGGAGTCCACGAGGGCGACCTGTGGAAATACATAGGTTTCTTACTCGTGCAAAGGAACTTTTTTCTTGGCAACTTGGACAACAAAATGTTGCTGTTACTGTCTATCTCAGTGCGGCATTCGACTCGCTGGACCCAAATGGAAAAATCGAAATCAAGTGGGATGTCATGTACTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACGAACTCTCAGATGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGTATGGGCAAAGAGAGAGGTTATCTGGTCGATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTCCAGAAACTATCCCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCAGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCCGTCTCTGCCTTTCAATTGACTGTTGGTCGTTCCGGTAGTTCAAATAAAACAGTGGGACTTCCTAAGAATTTCACCTTGTATGGTCCCGGGCTGGGTTACACATGTGGCCAAGCAAAGATTGCTCCCTCATCAGCCTTCTATTCATCTGATGGTCTGACTTGGAACGTGACGTGCTCTTATTCGCAGTTTATTGCTTCTGAAACACCAACCTGCTGTCTCTCAATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGACAGAGCGACTTGTATCCTGAGTGAATCAGATCATCAAAGCGTAACAGCATTGAATGCACCTACAAATGACAGTGCTCCATTGTTGCAGTGCACGATACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTCAAGATAACCATCAGCAATCTCAACTATCGATTTAACTATTCACAATGGACTCTTGTCGTTGAGCACCCCAATTTCAACAACACAGTGGAAGTTTATAGCTTTGTCCATAAGCCACTTACCCCTTTCATCTCTAAGAACGACACAGCTCTGTTCCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTCTACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCCTTCCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCCTTAAATTGAGATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGAAAGCTTTATAGACAAGTCAATTCCCTCATTGTCGCTCATCTTCGCGATCACAACCTCACCCAGGCAAACTTTTCTCTTCAAGCTTTTGGTTATTAAGTATCTGGGTCATCTCATTTCAGATTTTGCTGCAAGTGCTGCTGCTTCAGCTACAATGACACCGCTGAATGTTGATGTTCCACCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGATGAGATATTAAGAGGGAATCCTGCTTCTGCATTGTTTGAATTTGGTTCATCAGTGCCCACTACATTTGGATCTACACAGCCCTCTCGTGCTACTGCCATGGACTTCAGCTCTGCGCACGATACAAAAGGTTCGTCAAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGATTCAGTGCTGATGGGAGATTTGTTGCAACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATGCAAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTATGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACCATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACGCATAACGTGCGTTCTATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCGATTGCCCACCTGTATGATGTCAATACTTTTCAGTGTTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCGTCAAAAGATGGTGCAGTTCGTTTATGGGACGGCATTAGTGCGAAATGTCTTCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTATGTTCTTTCTTGTGGAAAGGACTCGAGTGTAAAGCTCTGGGATGTTGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACTCGTATGCAACTGAGGTGTCAGGCTGTCTTCAATGACACTGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAATGAGATTGTTATCTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCGAACCATGTTGGTGCACCACGGTGGCTCGAGCACTCTCCAACAGAGTCAGCCTTCATTTCCTGTGGGACCGATAAATCGATACGTTTTTGGAAGGAAACTCTCTAG 3156 42.93 MLSNGEVEYRCRLSKSINSLGPVESEGSIINNMNKNIPSHSDSYNSSYSTVDDLVGIRNFVYDDTFLVRDSNSSSYSIYLDIENQIFEIDNDPSFNEGVRVIGSSNPAAFMSRSFNCPSETRSRIQRAVAPPTRKGINMETSLPFGSENLWSPRGRPVEIHRFLTRAKELFSWQLGQQNVAVTVYLSAAFDSLDPNGKIEIKWDVMYWTADGYVATVTITNSQMYRHITSPGWTLGWVWAKREVIWSMQGAEATDQGDCSTFPETIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGVLTSWGQDPSSAVSAFQLTVGRSGSSNKTVGLPKNFTLYGPGLGYTCGQAKIAPSSAFYSSDGLTWNVTCSYSQFIASETPTCCLSMSSFYNSKITPCKACACGCQDRATCILSESDHQSVTALNAPTNDSAPLLQCTIHNCPIQVHWHVKENYKGYWRVKITISNLNYRFNYSQWTLVVEHPNFNNTVEVYSFVHKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVYSEMIFQKDSTFTLEQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANANPILLSTLACILLPIFLKLRWKAASNRPFKMESFIDKSIPSLSLIFAITTSPRQTFLFKLLVIKYLGHLISDFAASAAASATMTPLNVDVPPNKLMELVAKGLAVEKDEILRGNPASALFEFGSSVPTTFGSTQPSRATAMDFSSAHDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGISAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATRMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30284527 30296998 + CcPI632755_01g017530.1 Cco01g1753 170615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1753 1051 ProSiteProfiles Trp-Asp (WD) repeats profile. 884 925 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 SMART WD40_4 832 870 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 SMART WD40_4 787 826 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 SMART WD40_4 1008 1048 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 SMART WD40_4 731 770 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 SMART WD40_4 873 916 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 SMART WD40_4 919 960 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 ProSiteProfiles Trp-Asp (WD) repeats profile. 738 779 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 SUPERFAMILY WD40 repeat-like 730 1048 IPR036322 GO:0005515(InterPro)
Cco01g1753 1051 CDD WD40 734 1048 - -
Cco01g1753 1051 ProSitePatterns Trp-Asp (WD) repeats signature. 947 961 IPR019775 -
Cco01g1753 1051 ProSiteProfiles Trp-Asp (WD) repeats profile. 936 969 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 Pfam COBRA-like protein 213 369 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cco01g1753 1051 Pfam WD domain, G-beta repeat 735 769 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 Pfam WD domain, G-beta repeat 921 960 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 Pfam WD domain, G-beta repeat 791 826 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 Pfam WD domain, G-beta repeat 886 916 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 884 916 - -
Cco01g1753 1051 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 794 828 - -
Cco01g1753 1051 ProSiteProfiles Trp-Asp (WD) repeats profile. 794 835 IPR001680 GO:0005515(InterPro)
Cco01g1753 1051 Gene3D - 719 1050 IPR015943 GO:0005515(InterPro)
Cco01g1753 1051 FunFam Cleavage stimulation factor subunit 50 721 1051 - -
Cco01g1753 1051 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 635 1050 IPR044633 GO:0003723(PANTHER)|GO:0005848(InterPro)|GO:0005848(PANTHER)|GO:0031124(InterPro)
Cco01g1753 1051 MobiDBLite consensus disorder prediction 718 738 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1753 Cco-Chr1:30284527 Cco07g1676 Cco-Chr7:30755228 1.20E-161 dispersed
Cco01g1753 Cco-Chr1:30284527 Cco06g1747 Cco-Chr6:27963746 2.50E-159 wgd
Cco01g1753 Cco-Chr1:30284527 Cco07g1675 Cco-Chr7:30751789 6.50E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1753 K14406 - csv:101206503 777.704