Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco01g1754 | ATGTCTTTAGAACAAGAATTTCTGTTCCTTATTCCCTCAACAATGGCCAATAATCTCAATATCTTTCTTTGTTTTCTTCTCTTCGTGGCTATTTTCACCCTTTGCCTCACCCCTGGTGGTCTAGCTTGGGCTCTAATTTCAAAGCCAAGAAACAAACCCATCATTCCTGGGCCTTGTGGGACTCCTATTTTAGGTCAAGTTTCTGCCTTTACCACTTCTTTAACTCATAAAGTCCTTGCTAAGCTTGCTCATACCTTAAAGGCCAAATCTTTAATGTCATTCTCAATTGGGTTCACTCGTTTTGTGATTTCTAGCAATCCCATCACAGCCAAAGAACTTTTGAATAGCTCAGCTTTTGCTGATCGTCCAATTAAGGAATCAGCTTATGAGCTTTTATTTCATAGAGCAATGGGGTTTGCTCCTTATGGGGAATATTGGAGGAATCTTAGGAGAATTTCAGCCACTCATTTGTTTAGTCCTAAAAGGGTTTGTGGATTTGGGGTTTTGAGGGAGAGAATTGGAGTTAAAATGATGGAGGAAATTAAGGGTTTGATGGAGAAGAATGGGGAAGTTGAAGTTAGGAAAATCTTGCATTTTGGGTCATTGAGTAATGTTATGGGGAGTGTGTTTGGGAAAAGTGTTGAGTTTGGTGATAGTGAGATTGAGGGATTGGTGAGTGAAGGGTATGATTTGCTTGGGAGTTTTAATTGGAGTGATCATTTTCCTCTTTTGGGTTGGTTGGATTTGCAAGGTGTAAGAAAAAGGTGTAAAGTTTTGGTGGGGAAAGTTAATGTTTTTGTTGGAAAAATCATCGAGGAGCATAGAATGAAAAGGAGGGTTGTTAGTAAAGGAAATAATAACCCTAATGATAATGAAGATGGAGATTTTGTTGATGTGTTGCTTGATTTGCAAAAGGAAAACAAACTCACTGACTCTGATATGATTGCTGTGTTATGGGAAATGATCTTCCGAGGAACAGACACCGTGGCAATTCTCCTAGAATGGATTTTAGCAAGAATGGTTCTTCATCCCCATATCCAAGCCAAACTCCAATCCGAAATCGACCGAGTCGTTGCCAAAACCGGCCGAAACATCTCGGATTCAGACCTCCCAAATCTGCCTTATCTCCATGCAGTCGTCAAAGAGACTCTAAGAATGCACCCTCCGGGCCCACTCCTCTCCTGGGCCCGCCTCGCCATTCACGACACCCACGTGGCCGGCCACTTCATTCCCGCCGGCACGACGGCGATGGTTAACATGTGGGCCATAACCCACGACGACCAAATCTGGCCCGACCCGACTACATACGACCCGGATCGGTTCATTAAAGATGACGTGGCGATAATGGGGTCGGATTTGCGGCTCGCGCCTTTCGGGTCCGGAAGAAGGGTTTGTCCTGGTAAAGCCATGGGGCTAGCCACGGTCGAGCTTTGGCTCGCTCAGTTGGTTCATAGGTTCGAATGGGTTCAGGCTGGTGGCTGGGAAAATGGAGTTGATCTGTCTGAGTGTTTGAAGCTGTCTCTGGAGATGAAACACCCTTTGATTTGTAGGGCTGTTCCTAGGATTGTGGGGCTTGAGTCTCACCCATGA | 1590 | 44.78 | MSLEQEFLFLIPSTMANNLNIFLCFLLFVAIFTLCLTPGGLAWALISKPRNKPIIPGPCGTPILGQVSAFTTSLTHKVLAKLAHTLKAKSLMSFSIGFTRFVISSNPITAKELLNSSAFADRPIKESAYELLFHRAMGFAPYGEYWRNLRRISATHLFSPKRVCGFGVLRERIGVKMMEEIKGLMEKNGEVEVRKILHFGSLSNVMGSVFGKSVEFGDSEIEGLVSEGYDLLGSFNWSDHFPLLGWLDLQGVRKRCKVLVGKVNVFVGKIIEEHRMKRRVVSKGNNNPNDNEDGDFVDVLLDLQKENKLTDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPHIQAKLQSEIDRVVAKTGRNISDSDLPNLPYLHAVVKETLRMHPPGPLLSWARLAIHDTHVAGHFIPAGTTAMVNMWAITHDDQIWPDPTTYDPDRFIKDDVAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLVHRFEWVQAGGWENGVDLSECLKLSLEMKHPLICRAVPRIVGLESHP | 529 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 30317539 | 30319557 | - | CcPI632755_01g017540.1 | Cco01g1754 | 170616 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco01g1754 | 529 | FunFam | Cytochrome P450 78A5 | 47 | 521 | - | - | |
| Cco01g1754 | 529 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 458 | 467 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco01g1754 | 529 | Gene3D | Cytochrome P450 | 44 | 518 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g1754 | 529 | PANTHER | CYTOCHROME P450 78A7-RELATED | 18 | 518 | IPR051996 | - | |
| Cco01g1754 | 529 | CDD | CYP78 | 87 | 514 | - | - | |
| Cco01g1754 | 529 | Pfam | Cytochrome P450 | 56 | 489 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g1754 | 529 | SUPERFAMILY | Cytochrome P450 | 55 | 521 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g1754 | 529 | PRINTS | P450 superfamily signature | 456 | 465 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g1754 | 529 | PRINTS | P450 superfamily signature | 378 | 389 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g1754 | 529 | PRINTS | P450 superfamily signature | 465 | 476 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g1754 | 529 | PRINTS | P450 superfamily signature | 324 | 341 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g1754 | 529 | PRINTS | E-class P450 group I signature | 419 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g1754 | 529 | PRINTS | E-class P450 group I signature | 465 | 488 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g1754 | 529 | PRINTS | E-class P450 group I signature | 377 | 395 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g1754 | 529 | PRINTS | E-class P450 group I signature | 455 | 465 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g1754 | 529 | PRINTS | E-class P450 group I signature | 313 | 330 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g1754 | 529 | PRINTS | E-class P450 group I signature | 333 | 359 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g1754 | Cco-Chr1:30317539 | Cco11g1418 | Cco-Chr11:26930854 | 2.40E-150 | dispersed | |
| Cco02g0090 | Cco-Chr2:1000676 | Cco01g1754 | Cco-Chr1:30317539 | 3.40E-136 | transposed | |
| Cco01g1754 | Cco-Chr1:30317539 | Cco08g1203 | Cco-Chr8:23742250 | 5.20E-193 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco01g1754 | K20619 | - | csv:101203458 | 960.674 |