Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1754 ATGTCTTTAGAACAAGAATTTCTGTTCCTTATTCCCTCAACAATGGCCAATAATCTCAATATCTTTCTTTGTTTTCTTCTCTTCGTGGCTATTTTCACCCTTTGCCTCACCCCTGGTGGTCTAGCTTGGGCTCTAATTTCAAAGCCAAGAAACAAACCCATCATTCCTGGGCCTTGTGGGACTCCTATTTTAGGTCAAGTTTCTGCCTTTACCACTTCTTTAACTCATAAAGTCCTTGCTAAGCTTGCTCATACCTTAAAGGCCAAATCTTTAATGTCATTCTCAATTGGGTTCACTCGTTTTGTGATTTCTAGCAATCCCATCACAGCCAAAGAACTTTTGAATAGCTCAGCTTTTGCTGATCGTCCAATTAAGGAATCAGCTTATGAGCTTTTATTTCATAGAGCAATGGGGTTTGCTCCTTATGGGGAATATTGGAGGAATCTTAGGAGAATTTCAGCCACTCATTTGTTTAGTCCTAAAAGGGTTTGTGGATTTGGGGTTTTGAGGGAGAGAATTGGAGTTAAAATGATGGAGGAAATTAAGGGTTTGATGGAGAAGAATGGGGAAGTTGAAGTTAGGAAAATCTTGCATTTTGGGTCATTGAGTAATGTTATGGGGAGTGTGTTTGGGAAAAGTGTTGAGTTTGGTGATAGTGAGATTGAGGGATTGGTGAGTGAAGGGTATGATTTGCTTGGGAGTTTTAATTGGAGTGATCATTTTCCTCTTTTGGGTTGGTTGGATTTGCAAGGTGTAAGAAAAAGGTGTAAAGTTTTGGTGGGGAAAGTTAATGTTTTTGTTGGAAAAATCATCGAGGAGCATAGAATGAAAAGGAGGGTTGTTAGTAAAGGAAATAATAACCCTAATGATAATGAAGATGGAGATTTTGTTGATGTGTTGCTTGATTTGCAAAAGGAAAACAAACTCACTGACTCTGATATGATTGCTGTGTTATGGGAAATGATCTTCCGAGGAACAGACACCGTGGCAATTCTCCTAGAATGGATTTTAGCAAGAATGGTTCTTCATCCCCATATCCAAGCCAAACTCCAATCCGAAATCGACCGAGTCGTTGCCAAAACCGGCCGAAACATCTCGGATTCAGACCTCCCAAATCTGCCTTATCTCCATGCAGTCGTCAAAGAGACTCTAAGAATGCACCCTCCGGGCCCACTCCTCTCCTGGGCCCGCCTCGCCATTCACGACACCCACGTGGCCGGCCACTTCATTCCCGCCGGCACGACGGCGATGGTTAACATGTGGGCCATAACCCACGACGACCAAATCTGGCCCGACCCGACTACATACGACCCGGATCGGTTCATTAAAGATGACGTGGCGATAATGGGGTCGGATTTGCGGCTCGCGCCTTTCGGGTCCGGAAGAAGGGTTTGTCCTGGTAAAGCCATGGGGCTAGCCACGGTCGAGCTTTGGCTCGCTCAGTTGGTTCATAGGTTCGAATGGGTTCAGGCTGGTGGCTGGGAAAATGGAGTTGATCTGTCTGAGTGTTTGAAGCTGTCTCTGGAGATGAAACACCCTTTGATTTGTAGGGCTGTTCCTAGGATTGTGGGGCTTGAGTCTCACCCATGA 1590 44.78 MSLEQEFLFLIPSTMANNLNIFLCFLLFVAIFTLCLTPGGLAWALISKPRNKPIIPGPCGTPILGQVSAFTTSLTHKVLAKLAHTLKAKSLMSFSIGFTRFVISSNPITAKELLNSSAFADRPIKESAYELLFHRAMGFAPYGEYWRNLRRISATHLFSPKRVCGFGVLRERIGVKMMEEIKGLMEKNGEVEVRKILHFGSLSNVMGSVFGKSVEFGDSEIEGLVSEGYDLLGSFNWSDHFPLLGWLDLQGVRKRCKVLVGKVNVFVGKIIEEHRMKRRVVSKGNNNPNDNEDGDFVDVLLDLQKENKLTDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPHIQAKLQSEIDRVVAKTGRNISDSDLPNLPYLHAVVKETLRMHPPGPLLSWARLAIHDTHVAGHFIPAGTTAMVNMWAITHDDQIWPDPTTYDPDRFIKDDVAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLVHRFEWVQAGGWENGVDLSECLKLSLEMKHPLICRAVPRIVGLESHP 529
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 30317539 30319557 - CcPI632755_01g017540.1 Cco01g1754 170616
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1754 529 FunFam Cytochrome P450 78A5 47 521 - -
Cco01g1754 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco01g1754 529 Gene3D Cytochrome P450 44 518 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1754 529 PANTHER CYTOCHROME P450 78A7-RELATED 18 518 IPR051996 -
Cco01g1754 529 CDD CYP78 87 514 - -
Cco01g1754 529 Pfam Cytochrome P450 56 489 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1754 529 SUPERFAMILY Cytochrome P450 55 521 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1754 529 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1754 529 PRINTS P450 superfamily signature 378 389 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1754 529 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1754 529 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1754 529 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1754 529 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1754 529 PRINTS E-class P450 group I signature 377 395 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1754 529 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1754 529 PRINTS E-class P450 group I signature 313 330 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1754 529 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1754 Cco-Chr1:30317539 Cco11g1418 Cco-Chr11:26930854 2.40E-150 dispersed
Cco02g0090 Cco-Chr2:1000676 Cco01g1754 Cco-Chr1:30317539 3.40E-136 transposed
Cco01g1754 Cco-Chr1:30317539 Cco08g1203 Cco-Chr8:23742250 5.20E-193 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1754 K20619 - csv:101203458 960.674