Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1779 ATGGGGGAGGAGAAGAGGCACCAGATGATGCAGAATCTCTTTGGAGATCAATCCGAGGAGGAAGAAGAGATTGATTCCGAGCACGAGTCCAATCCGCAACCCAATTATGCCTCTGATGAAGGGGAAGGAGGGGCGGAGCCTGAAGGTGAAGGCGAAGTGGAGGGACAGGGGGAGGTGGAAATCGAGAGTGAAGGTGAGTTGCAGGATGTTGATCCGGATCCTGGAGAAAGTGAGGGTGAAAGGGATCAAAGTTCTCAAGAAGCAGACGTGGGTCACCATAGGGAAGAAGAAAGTGAAGGGAAAGAGGTGGATAGCGACGATAGGGAAGAATATAGTCAAAGAGTGGTAACAAGCAGGAGGCATGATTTAGTTGAAAGTGAATCGGAGAGGTCTGAAGAAAACCACTACATTGACAATGAAGACGAAGAGGTGGATCAAACTAGGAGTCCAAGGGAGGAGAGGGATCACAGTTCACATCCAGTTGCTGAAATTCGCGATGTATTTGGTGACTCTGACGAGGAAGAGGAAGCAGAATATGCAGTTGAAAATGATATTAAGCAAGACTCGGCTAGGTCACCTATGGAAGAGGAGGGGAGCTTTGAGAAGAGTCCAAGACCAGATGATATCATTCCTGATGAAGATGCTCGGTATGAGTCAGATGCTCGTTATGAATCAGAAGAGGAAAATTTTGAGGTCAAACATAAAGAGAAGCCAGTTGGGCCTCCATTGGAGCTAGAGATTCCATTACGTCCTCCTCCTGCTCGCCCAGAAAAGATGAACATGATAAAAGTTTCCAATATTATGGGCATTGATCCAAAACCATTTGATCCCAAAACATATGTGGAAGAGGATATATTTGTGACAGACGAATCTGGAGCTAACAAACGCATACGGTTGGAAAATAACATTGTGCGCTGGAGGACTGTTAGGAAACCTGATGGCACAACAAATTATGAAAGCAATGCACGTTTTGTGAGGTGGTCAGATGGCAGTTTGCAACTGTTAATTGGGAATGAAGTGCTCGACATAAATGTGCAAGATGCAAAGCATGATCAAGCACACTTGTTTCTTCGGCATGGGAAGGGAATTTTGCAATCACAAGGTAGGCTTATGAGGAAGATGAGGTTCATTCCATCATCCCTGACATCAAATTCTCACCGCTTATTAACTGCTTTGGTTGACTCACGACATAAGAAGGTGTATAAGGTTAAGAATTGCATAACGGACATTGATCCTGAAAGGGAAAAGGAGGAAAAAGAAAGGGCCGAAAGTCAAACAATCCGGGCAAATGTGCTTCTTAATCGGAAAAAGGAAAAGGTTAACAAGAAATATACTCCTGTCATTGATAGAAGGCGCCAACTATCACCTGGGTTCTTGGAAGATGCCCTTGAGGAGGAAGATGAAACAGATTATATTGACGCACGTCGCTCCCGTTGCCGCTTTGAAGAAGATTTGGAAGCGGAAGCTCGAGCAGAAAAACGTATTATGAATGCAAAGAAGGGAACTAGAGACATTCCCCGGAAGCCATCCTTTCCCGCTTCTAAATCATCTGGGCGTCCTGTGGATTTCTCAGACAGTGACAGGGAAGAGTCTGAGTACGAAAGTGAAGGAGAAGATGATGTTCCCGGGAGAGTTGAAGAACCAGAGCAGGAGTATGAGGAAGAGGGGGAAGAAGATGATGAACGTGATGAAGAGGCAGAAGTTAATGACGTTTCAGATGTGGATGAAGAGGCTGAGGAGCCCAAACATAAGGTTAGAGATTATGGGGGCAGTCACAAGCGCAAGGGGATTGAGTCTGATGAGGAGTCTCCTCCAAGAAAGGTTGCAACCCATCGTAGGATGGCAGTTGTTTATGACAGCGACGAGGAGTGA 1872 45.73 MGEEKRHQMMQNLFGDQSEEEEEIDSEHESNPQPNYASDEGEGGAEPEGEGEVEGQGEVEIESEGELQDVDPDPGESEGERDQSSQEADVGHHREEESEGKEVDSDDREEYSQRVVTSRRHDLVESESERSEENHYIDNEDEEVDQTRSPREERDHSSHPVAEIRDVFGDSDEEEEAEYAVENDIKQDSARSPMEEEGSFEKSPRPDDIIPDEDARYESDARYESEEENFEVKHKEKPVGPPLELEIPLRPPPARPEKMNMIKVSNIMGIDPKPFDPKTYVEEDIFVTDESGANKRIRLENNIVRWRTVRKPDGTTNYESNARFVRWSDGSLQLLIGNEVLDINVQDAKHDQAHLFLRHGKGILQSQGRLMRKMRFIPSSLTSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKEEKERAESQTIRANVLLNRKKEKVNKKYTPVIDRRRQLSPGFLEDALEEEDETDYIDARRSRCRFEEDLEAEARAEKRIMNAKKGTRDIPRKPSFPASKSSGRPVDFSDSDREESEYESEGEDDVPGRVEEPEQEYEEEGEEDDERDEEAEVNDVSDVDEEAEEPKHKVRDYGGSHKRKGIESDEESPPRKVATHRRMAVVYDSDEE 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30516185 30520821 - CcPI632755_01g017790.1 Cco01g1779 170641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1779 623 MobiDBLite consensus disorder prediction 576 623 - -
Cco01g1779 623 MobiDBLite consensus disorder prediction 77 167 - -
Cco01g1779 623 PANTHER LEO1 PROTEIN 58 619 IPR007149 GO:0005634(PANTHER)|GO:0006368(InterPro)|GO:0016593(InterPro)|GO:0032968(PANTHER)|GO:1990269(PANTHER)
Cco01g1779 623 MobiDBLite consensus disorder prediction 1 256 - -
Cco01g1779 623 MobiDBLite consensus disorder prediction 494 623 - -
Cco01g1779 623 MobiDBLite consensus disorder prediction 182 241 - -
Cco01g1779 623 MobiDBLite consensus disorder prediction 527 575 - -
Cco01g1779 623 Pfam Leo1-like protein 261 420 IPR007149 GO:0006368(InterPro)|GO:0016593(InterPro)
Cco01g1779 623 MobiDBLite consensus disorder prediction 43 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1779 K15177 - - csv:101221752 1064.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g641 . Blo16g00172 . . . Bpe13g00308 Bma06g00156 . Cmo13g01129 . . . . . . Cpe20g00067 . . . . . . . . . . . . . . . Cone2ag0815 Cone16ag0199 . . Lsi02g00109 . Chy12g01508 Cme12g01953 . . Bda11g01718 . . . . . Sed08g2112 . . Cma13g01081 . Car13g00918 . . . Bhi08g01102 Tan05g2374 Cmetu12g0892 . Hepe07g2474 . . Cla04g01164 Cam04g1222 Cec01g1733 Cco01g1779 Clacu04g1249 Cmu04g1228 Cre01g1524 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005345 1 2 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 0 1 1 1 1 1 1 5 2 2 40