Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1787 ATGGAAGCTTTGATTAGTCAAAAAAGAGTGAGTTTTTCGGATTCAGGACAATATAAAAAGGATGCTTCCATCAAACCTAGAGATGGAATTCCACAGAAAAAAACAAGATCCTTCAAAGAGGATAAAAAGGAGTCCAAGATGTTACAATGGCATTTTTCAAACCAAATGAATGAGGATTATGATTCAAGGGATATAGAGTTTGCCACCGCAGTAGCATCAGTTGCATTTGCAATTCGCTCCCAAGAAGAAACAGATTTACAATATCAGAAAAAGAAGAGAGAAAACCTGGAAGCCTCAATAACAAAGGTTAAAAGCAGAAAAGATGATACAGCTGCGCTCGCTCACAGCATAACAAGACGATTGTCTAACAAGGAAGCCACCAATCCTGGTCAATCTTCAATAAAGAAGCCAATGGGACAGGAAAAGATCAAGGAATCAGTGACTGGAATTCCCATACCGCCGCCGAGACGGAGCCTTGTACCAACTAAAGCAGATGTGTGGGAGAGAAATAAGATGGAGAAGATTAGTAAAAGGTATCAGAAGATAAAAGCTTCAATTCTTGCTTGGGAGAATGAGAAAAAAATGCGTGCGAAACTTCATATGGAAAAGAAAAAGGTTGAATTGGAGCGCCAAAAGGCACTGTTTCTGCAATATTACCAGGAGAACATAGCACGTATCGACCAGATCGCAGGGGGAGCAATGGCACAGCTAGAAGAGAAGAGAAAAAAGGAAGAGAATAAAGCAAGAAAAACAGCAAACAGAATCAGATCAACTGGAAGACTTCCTGTCCTGGCACAATTCACCCTTTCTGAGATAGTGATGTATAAGTCTATATTCTACTCATCTGCAAGTGCAAACAATTATGCTTTAGGATTTGTAATGCATCTAACTGTTGATCCAATAGTACCAAACAAGTTGAATATGCGAAATCCTACAACAAGGGAAATGAATATGTGA 957 39.29 MEALISQKRVSFSDSGQYKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSNQMNEDYDSRDIEFATAVASVAFAIRSQEETDLQYQKKKRENLEASITKVKSRKDDTAALAHSITRRLSNKEATNPGQSSIKKPMGQEKIKESVTGIPIPPPRRSLVPTKADVWERNKMEKISKRYQKIKASILAWENEKKMRAKLHMEKKKVELERQKALFLQYYQENIARIDQIAGGAMAQLEEKRKKEENKARKTANRIRSTGRLPVLAQFTLSEIVMYKSIFYSSASANNYALGFVMHLTVDPIVPNKLNMRNPTTREMNM 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30582632 30584983 - CcPI632755_01g017870.1 Cco01g1787 170649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1787 318 PANTHER OS02G0116800 PROTEIN 99 262 - -
Cco01g1787 318 Coils Coil 234 254 - -
Cco01g1787 318 MobiDBLite consensus disorder prediction 20 44 - -
Cco01g1787 318 MobiDBLite consensus disorder prediction 1 44 - -
Cco01g1787 318 Pfam Remorin, C-terminal region 162 262 IPR005516 -
Cco01g1787 318 Coils Coil 172 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1787 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g622 . . . . Bpe12g00529 . . . Cmo13g00940 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00101 Csa01g00580 Chy12g01516 Cme12g01962 . . . . . . . . Sed08g2099 . . Cma13g00913 . Car13g00753 . . . Bhi08g01121 Tan05g2402 Cmetu12g1770 . . . . Cla04g01173 Cam04g1230 Cec01g1741 Cco01g1787 Clacu04g1257 Cmu04g1236 Cre01g1531 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007325 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 0 1 1 1 1 5 4 1 36