Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1790 ATGGTTTCAAAGAGATCAGTAATTGGTGTAGAATCATTGAAGCCAAAGAAGAAAGTATGTGTAATTGGAGCAGGAGCCTCAGGGCTTGTAGCAGCCAGAGAGCTAAGAAAAGAAGGCCACAAAGTAACAGTTTTGGAGCAAAACGAGGAGGTTGGTGGGCAGTGGCTATACGATCCAAATGTAGAAAATGAAGATCCTTTAGGAAAATCAAAATTCCTGAATGTTCATAGCAGCATTTACTCATCTCTAAGGCTTGCTTCTCCAAGGGAAATTATGGGGTTTTCTGATTTTCCTTTTATTACTAAGAAAGGGCGTGACAGTAGGAGATTTCCTGGCCATAAAGAACTGTTTTTGTACTTGAAGGATTTTTGTCAATGCTTTGGTTTGACACAACTCATAAGGTTTAATACTAGAGTTGAATATGTGGGGATTATCAATACTAAGATTGGTTGTTTTGGAGGGATTAAGGATCAGATTCAATGGGTTGTTAGAAGTAGAGATTATTGTAAGTATAAGACAGATTATAATGATGGGGATGATCATCATCTGATTGAAGAAGTTTTTGATGCTGTTGTTGTTGCTACTGGACATTATTCTCATCCCAGATTGCCCACCATTAAAGGAATGGACAGATGGAACAGAAAGCAAATTCACAGTCATGTTTATAGGGTTCCTGACCCATTTCGCAACGAGGTAGTGGTGGTGGTGGGAAACTCTCAAAGTGGGCAAGACATATCGCTAGATCTAATAGAAGTGGCAAAGGAAATTCATATAAGCACAAAATCAATAAACACTATCACTGAGGGTTTATCCAAAGTCATCCAAAAATATCAAAACTTGCATCTTCAACCACAGATTGAATCTCTTGAAGAAGATGGGCGAGTGGTGTTTGTTGATGGGACCTCTATAGTTGCTGATACTATTTTATATTGCACTGGATATTCATACGCATTTCCATTTCTTGACACGAAAGGAATAGTTGTTGTAGATGATGATCGAGTGGGACCTTTGTATGAGCATACGTTTCCCCCATCTTTGGCTCCCTCCCTTTCGTTTATAGGCATTCCACGAAAGCTCATAGGTTTCCCTTTCTTTGAATCACAAGCAATATGGATAGCTCAACTGCTGTCTGGGAAAAGGACATTGCCATCATGTGATGATATGATGCAATCCATCAAAGAGTTTTATCTCTCAAAAGATACTGCTGGCATTCCAAAGCACAATACCCATGATTTAGCTGAATTTGAGTATTGCGATAAGTATGGCGATAACGTTGGATTTCCACGTTTGGAGGAATGGAGGAAAAAACTGTGTGTATCAGCCATTGTAAATTCCTCAATCAACCTCGAATCGTTTCGGGATTCGATGGATGATGATGAGGATCTTCAAGAGGCCTATCAAAGCCCTCATTTCACTCAACTTGGAGCTCAAGTTTTTCCTCTGTAA 1446 39.49 MVSKRSVIGVESLKPKKKVCVIGAGASGLVAARELRKEGHKVTVLEQNEEVGGQWLYDPNVENEDPLGKSKFLNVHSSIYSSLRLASPREIMGFSDFPFITKKGRDSRRFPGHKELFLYLKDFCQCFGLTQLIRFNTRVEYVGIINTKIGCFGGIKDQIQWVVRSRDYCKYKTDYNDGDDHHLIEEVFDAVVVATGHYSHPRLPTIKGMDRWNRKQIHSHVYRVPDPFRNEVVVVVGNSQSGQDISLDLIEVAKEIHISTKSINTITEGLSKVIQKYQNLHLQPQIESLEEDGRVVFVDGTSIVADTILYCTGYSYAFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFIGIPRKLIGFPFFESQAIWIAQLLSGKRTLPSCDDMMQSIKEFYLSKDTAGIPKHNTHDLAEFEYCDKYGDNVGFPRLEEWRKKLCVSAIVNSSINLESFRDSMDDDEDLQEAYQSPHFTQLGAQVFPL 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30613222 30616363 + CcPI632755_01g017900.1 Cco01g1790 170652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1790 481 Gene3D - 205 311 IPR036188 -
Cco01g1790 481 PRINTS Flavin-containing monooxygenase (FMO) signature 363 376 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Cco01g1790 481 PRINTS Flavin-containing monooxygenase (FMO) signature 41 65 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Cco01g1790 481 PRINTS Flavin-containing monooxygenase (FMO) signature 298 325 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Cco01g1790 481 PRINTS Flavin-containing monooxygenase (FMO) signature 17 33 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Cco01g1790 481 Pfam Flavin-binding monooxygenase-like 16 264 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Cco01g1790 481 Pfam Flavin-binding monooxygenase-like 279 396 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Cco01g1790 481 SUPERFAMILY FAD/NAD(P)-binding domain 268 438 IPR036188 -
Cco01g1790 481 SUPERFAMILY FAD/NAD(P)-binding domain 15 258 IPR036188 -
Cco01g1790 481 PANTHER DIMETHYLANILINE MONOOXYGENASE 16 471 IPR050346 -
Cco01g1790 481 Gene3D - 18 454 IPR036188 -
Cco01g1790 481 FunFam Flavin-containing monooxygenase 205 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1790 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1790 Cco-Chr1:30613222 Cco10g0296 Cco-Chr10:3510037 9.70E-114 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g609 Blo04g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00096 . Chy12g01520 Cme12g01966 . . . Bda14g00865 . . Bma03g00842 . Sed08g2095 . . . . . . . . Bhi08g01127 Tan05g2408 Cmetu06g2174 . Hepe07g1737 . . Cla04g01176 Cam04g1233 Cec01g1744 Cco01g1790 Clacu04g1261 Cmu04g1240 Cre01g1534 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009615 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 33