Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1793 ATGGGGTGTGTGAACTCGAAGCAGGCGGTGTCCGTCACGCCTGCATTCGATCACTCCGGCGTGTTTCGAGACAATGAATCAACGGCGGTGGGGAACTCGGGTCGGAGCCGAGTTGGGTTCGGGGAGATTGAGAAGAGTTCGAAGCCGAAGGCTAAGATGAAGACGAAGGGGTCCAGTGAGTTTAATGGGGTTGGGTGCGAGTTCGGTGAGTCGGGGAGAGCGAGTTCAAATGGTGGAGGGAATGAGACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATGGAAGGGGAACAAGTGGCGGCGGGGTGGCCGGCCTGGCTCAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGGTTCCACTCCGGTCCGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTATTCCGAGCACGTGAACTTGAAACGGGAAGGATCGTTGCTCTAAAGAAAGTTCGATTCGACAATTTTGAGCCTGAAAGTGTTAGATTTATGGCACGAGAGATCATGATTCTCCGCAGGCTTGATCACCCTAACATCATCAAATTGGAGGGCTTAATTACGTCTCGTTTATCATGTAGCATTTACCTCGTGTTTGAGTACATGGACCACGACATTACTGGACTCTTGTCCTGCCCCGATATCACTTTTAGTGAATCGCAGATTAAATGCTACATGAAACAATTGATATCCGGGCTTGAGCATTGTCACTCACGTGGTGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGATATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCCGGCCACCGACAACCTCTAACGAGTCGCGTTGTCACTCTGTGGTATCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTCGCAGAACTTCTAGTTGGAAAACCTATTCTTCAAGGAAGAACAGAGGTCGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAATACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCACAACATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATTATCCTCCGACGACTGTGAACTTGTTAGAAACTCTTCTTTCCGTGGAACCATACAAGCGTGGAGTTGCCTCCTCTGCTCTCACATCTGAGTATTTCAGTGTGAAACCGTATGCATGCGATCCATCAAGCATGCCTATATATCCACCTAACAAAGAGATTGATGCCAAACAAAGAGAGGAGACTAGAAGGAAAAAAGGTAGTGGAAGAGCCCGTGGACTAGATAATAGAAGGTTAACGCGTAAGCATCTTGGAATCAGTAAATTGGCACCAGCAGAGGACTTATCAGTCTCAGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATTTTAAAGAAGAAAAAGTTATCAAATGTGTTGAGGCGCAAAAGCTGTCTATTGATAAATTGGAAGAGACTATACATGTAAAGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTACAAGTTTCGACATCAAGTGGCTTTGCGTGGGCTAGACGACGAAGAGATGATGCCTCTATTAGATCTTATTCCAGGTCAATTTCAAGAGGACACTTAATTAATGGGCTGGACGATTCTACTACATTGCATTCAAGAAGCAATTTGGACTCTAAGTTTCATGAAAAGGGTGACATGTCGTCCTTCAGCCGCTCAAGTTCCAAGGGTCATGAATCAAATGAGAGATCAAAGGTTGTGACAAGGAACCAGTGGGGCAAGTTTGAGCGTCCTGATTCCTTTGATACTTCGGATGAGTACCACTCGCAGGAATTTGCATCGGCACTGTATATGCGAGATGAAATGGAAGCTAAGAGAAATAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAAACAGACACGAGAGGCATATCCGACAGACAGTTCGAAGATCATGGTTTCAAAGAGGTAAAAATTGA 2091 44.95 MGCVNSKQAVSVTPAFDHSGVFRDNESTAVGNSGRSRVGFGEIEKSSKPKAKMKTKGSSEFNGVGCEFGESGRASSNGGGNETLSFRLGNLNKYMEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLISGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDYPPTTVNLLETLLSVEPYKRGVASSALTSEYFSVKPYACDPSSMPIYPPNKEIDAKQREETRRKKGSGRARGLDNRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNFKEEKVIKCVEAQKLSIDKLEETIHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDDASIRSYSRSISRGHLINGLDDSTTLHSRSNLDSKFHEKGDMSSFSRSSSKGHESNERSKVVTRNQWGKFERPDSFDTSDEYHSQEFASALYMRDEMEAKRNNLSYQDQVDKVEYSGPLLSQSSRVDELLNRHERHIRQTVRRSWFQRGKN 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30641177 30645817 + CcPI632755_01g017930.1 Cco01g1793 170655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1793 696 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524(InterPro)
Cco01g1793 696 Gene3D Transferase(Phosphotransferase) domain 1 210 450 - -
Cco01g1793 696 MobiDBLite consensus disorder prediction 578 611 - -
Cco01g1793 696 MobiDBLite consensus disorder prediction 41 55 - -
Cco01g1793 696 MobiDBLite consensus disorder prediction 425 455 - -
Cco01g1793 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1793 696 FunFam probable serine/threonine-protein kinase At1g54610 210 450 - -
Cco01g1793 696 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
Cco01g1793 696 FunFam probable serine/threonine-protein kinase At1g54610 114 209 - -
Cco01g1793 696 CDD STKc_CDK9_like 127 411 - -
Cco01g1793 696 MobiDBLite consensus disorder prediction 596 611 - -
Cco01g1793 696 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1793 696 MobiDBLite consensus disorder prediction 25 58 - -
Cco01g1793 696 PANTHER CELL DIVISION PROTEIN KINASE 127 411 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cco01g1793 696 MobiDBLite consensus disorder prediction 431 455 - -
Cco01g1793 696 Pfam Protein kinase domain 127 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1793 696 SUPERFAMILY Protein kinase-like (PK-like) 121 413 IPR011009 -
Cco01g1793 696 SMART serkin_6 127 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1793 Cco-Chr1:30641177 Cco05g0679 Cco-Chr5:5590154 5.80E-160 dispersed
Cco11g0469 Cco-Chr11:4996384 Cco01g1793 Cco-Chr1:30641177 7.50E-185 transposed
Cco01g1793 Cco-Chr1:30641177 Cco08g1172 Cco-Chr8:23484820 2.60E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86536 PF00069 Pkinase 8.70E-68 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1793 - - - 0.0