Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g1794 | ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATCGCGGAGAGAGTGTACGTTTTTGATTGTTGCTTCTCTACCGAGGTGTTGGAGGAGGATGAGTACAGAGTGTACTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCGGATGCATCTTTCTTGGTGTTTAACTTTAGTGAACGAAAGAGGAAGACTAAAACTTCGGACATCCTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTTCAATATGAAGGGTGTTCACTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGTTGGTTGTCATTGGAGAGACAGAAAAATGTATTGTTGATGAACTGTGAACGAGGTGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTTTTATTGTACCGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTATAGGCAAGCTCCTAGAGAACTTTTCCATGTCCTATCTCCTGTAAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATTTAGGTTCTGATTGGCCTCCACCTGATACGCCCCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGATGGAGGAAAGGGGTGGAGGCCCATCATACGCATTTACAGTCAGGACCCATTAACACCACGAAATAGAAGCCCAAAACTTGTCTTCTCGAGCGCAAAGAAGGAAAGACATGGTTGCCAGTATCTACAGGCAGCAAGCAGATTAGTAAAAGTGGATGTCCATTGTCACATTCAAGGCGATGTTGTTCTTGAATGCATCCGTTTAGATGGAGATCTAATACATGAGGAAGTGATGTTTAGAATTATGTTTCACACAGCATTTGTGCACTCAAACAGTTTGAAGCTCAATTGTGACGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTTCTAAAGATTTTAGAGCAGAGGTACTTTTTCTGGATGCTAATCATGTTGTGCCAAACAACCGTTCCTCGACCAGAAGTGATGATAAAATTGAGATTGAAAGCAATTCAACTGAGGAATTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGATTATGATGTTCAAACGGTACATGCTAACGAAACAGATTATATTGACCATCAAGCAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCAAAACTTGGACAAGAAGATAGATTGTAACGTTGAAGCAGTGAAGGACATTACTGTTGATGATGTAACTTTCAAGACAGCTGAAAAAGTGGACTCTGGTCTTCAAGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCAAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGCAATCAAGGAACTGATTGATGATGCTTATGACAAGTTGGAAGGGGTGCAGCATAAAGGGTACGGAGAAGATACTGCCATTCCACACTTTGAATCAAAGGTTCCTTCGAAAAAGTTGGAAGCTGATGCGTGGAGGCTTAAATTTGAGAAGTTGCAATCAACGTCAAGGAAACAGCCGTCATCAACAATTAAGCCAATAAATCATGCAATTGTAGCTAAACAGAAAACCAAACAGCCAGAAGATCAGTTTCTTGTAAAACAGGCCAAACCAAATACTCTTTCTAGATTGATTTCACATGACAAAGAACCTTACACAAACTCCATGCATTTGTTTTATCCACCATCAAGGCATACTAGTGACTCAGCAACAGCTATTAGTTCTCCTACTAAAGATTTTTATTCATATTCATATTCAACTTCAAAATCTGCTTCTGCTTCTGCTACTTCAGGACTGCTGCTGTCTGATACAGCTGATGAACAAAAAAGTGACAAGGTGAGTCCTAAGAAACCTTTATGTTCTGCAACAGAGATTCTCAAGAGTAAACCACAATCACCACTTGACTCCTCAAGACCATTGCCAAACGCTGTTCAGTATCAAGATCCTACTCTTCCTCTATCTGCTACTACACTTCTACAGCCACCAGCTCTTCAGGCCGACACATCTTTCTTGCATGCATCATCTCCTAAATCTTCTTTGTCTCCCTCTACACATTATCACAAAAATGCAAGATCTCCTCCTCCAGCTCCGCCTCCACCACCACCTCCTCCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCAGCACCACCTCCACCTCCCATACGTAGAGCTCAACCACAATTACCTCCCCCACGACCACCCTCATCACATGGAGCTCTGCTTTCTCCATGCCTATCAAATGCTGGAGCTTTTCCACCACCCCCTCCGCCACCTCCTCCAATTCAGAGGAGAGCTCCTCCACATTTAACCCAGGGGCAACAGGCTTTAACATCTGCAACAGCCTGTGTTGTCTCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTCCTCAACCTACAACTGGTCCCCTTCCCCCGGTTCCTTCTTCTTCTTCTAAACCTTCAGGAGGTATGACTCCGCACCTGGGAGGTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTGAGGGGACGTGGGTTCTCGCGGTCAACTGGGATGGGGGTGGCTACTACTGGGCTTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGATTCAGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGATTGTCCCTAAACCTATTGTTGATTCCGGAGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGATATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTACTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAGCTTCTCAAGGGATACTCTGGTGACAAGGATAAACTTGGCAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCAAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGATAGCAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTCGCAAATTGAAGGAGATAATGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACAGCTAGGGGTTCGGCAATTGGATTCAGGTTGGACAGCCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACATTGGTAGCTTAGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAGGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTTCATAAGATATTGGAAGGATTTGTTACTCTTGCCGAGATGGAGGTGGAATCTGTGACAGTTCTTTACTCAGTGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGCGAGGATCCAGCCCGTTGTCCATTTGAACAAGTTACAGGAACCCTCTTCCATTTTACAAGGTCCTTTTTGAAAGCACATGAAGAGAACTGCAAGCAGTTAGAAATGGAGATGAGAAAGATGAGAAAATAG | 3888 | 42.9 | MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTEVLEEDEYRVYLGSIIPKLQDHFPDASFLVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFHVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDTPLILDCLILRELPMLDGGKGWRPIIRIYSQDPLTPRNRSPKLVFSSAKKERHGCQYLQAASRLVKVDVHCHIQGDVVLECIRLDGDLIHEEVMFRIMFHTAFVHSNSLKLNCDEVDVLWDAKEQFSKDFRAEVLFLDANHVVPNNRSSTRSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQTVHANETDYIDHQAVWKEDADPPTFQRCKSFGGSQNLDKKIDCNVEAVKDITVDDVTFKTAEKVDSGLQVVKDIVVDYGDKKPNPLLFSVNVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIPHFESKVPSKKLEADAWRLKFEKLQSTSRKQPSSTIKPINHAIVAKQKTKQPEDQFLVKQAKPNTLSRLISHDKEPYTNSMHLFYPPSRHTSDSATAISSPTKDFYSYSYSTSKSASASATSGLLLSDTADEQKSDKVSPKKPLCSATEILKSKPQSPLDSSRPLPNAVQYQDPTLPLSATTLLQPPALQADTSFLHASSPKSSLSPSTHYHKNARSPPPAPPPPPPPPPKSSSLVCGNTPKHSAPPAPPPPPIRRAQPQLPPPRPPSSHGALLSPCLSNAGAFPPPPPPPPPIQRRAPPHLTQGQQALTSATACVVSSSLPSPICEAPSPPQPTTGPLPPVPSSSSKPSGGMTPHLGGKGVSSSTDVKTSSIVRGRGFSRSTGMGVATTGLQRSSLKPLHWSKVTRVLQGSLWEELQRCGDSESAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIAEFKKSLNTVNSVCQEVKNSRKLKEIMKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDIGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISETFHKILEGFVTLAEMEVESVTVLYSVAGRNADALALYFGEDPARCPFEQVTGTLFHFTRSFLKAHEENCKQLEMEMRKMRK | 1295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 30651277 | 30660776 | + | CcPI632755_01g017940.1 | Cco01g1794 | 170656 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g1794 | 1295 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 899 | 1295 | IPR015425 | - | |
Cco01g1794 | 1295 | MobiDBLite | consensus disorder prediction | 708 | 725 | - | - | |
Cco01g1794 | 1295 | SMART | it6_source | 899 | 1294 | IPR015425 | - | |
Cco01g1794 | 1295 | MobiDBLite | consensus disorder prediction | 812 | 836 | - | - | |
Cco01g1794 | 1295 | MobiDBLite | consensus disorder prediction | 871 | 899 | - | - | |
Cco01g1794 | 1295 | SMART | PTEN_C2_2 | 198 | 338 | IPR014020 | - | |
Cco01g1794 | 1295 | ProSiteProfiles | C2 tensin-type domain profile. | 200 | 339 | IPR014020 | - | |
Cco01g1794 | 1295 | Gene3D | - | 205 | 336 | - | - | |
Cco01g1794 | 1295 | MobiDBLite | consensus disorder prediction | 755 | 782 | - | - | |
Cco01g1794 | 1295 | Coils | Coil | 1182 | 1202 | - | - | |
Cco01g1794 | 1295 | Pfam | C2 domain of PTEN tumour-suppressor protein | 198 | 336 | IPR014020 | - | |
Cco01g1794 | 1295 | MobiDBLite | consensus disorder prediction | 662 | 684 | - | - | |
Cco01g1794 | 1295 | Pfam | Formin Homology 2 Domain | 907 | 1275 | IPR015425 | - | |
Cco01g1794 | 1295 | MobiDBLite | consensus disorder prediction | 642 | 684 | - | - | |
Cco01g1794 | 1295 | Gene3D | Protein tyrosine phosphatase superfamily | 14 | 204 | IPR029021 | - | |
Cco01g1794 | 1295 | Gene3D | Formin, FH2 domain | 901 | 1286 | IPR042201 | - | |
Cco01g1794 | 1295 | PANTHER | FORMIN-J | 797 | 1293 | IPR051144 | - | |
Cco01g1794 | 1295 | MobiDBLite | consensus disorder prediction | 728 | 746 | - | - | |
Cco01g1794 | 1295 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 797 | 1295 | - | - | |
Cco01g1794 | 1295 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 200 | 336 | IPR035892 | - | |
Cco01g1794 | 1295 | MobiDBLite | consensus disorder prediction | 837 | 857 | - | - | |
Cco01g1794 | 1295 | MobiDBLite | consensus disorder prediction | 793 | 810 | - | - | |
Cco01g1794 | 1295 | MobiDBLite | consensus disorder prediction | 708 | 899 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1794 | Cco-Chr1:30651277 | Cco06g1422 | Cco-Chr6:24739804 | 1.20E-251 | dispersed | |
Cco01g1794 | Cco-Chr1:30651277 | Cco06g1795 | Cco-Chr6:28351065 | 1.20E-179 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g1794 | K28090 | - | csv:101221127 | 2136.3 |