Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1794 ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATCGCGGAGAGAGTGTACGTTTTTGATTGTTGCTTCTCTACCGAGGTGTTGGAGGAGGATGAGTACAGAGTGTACTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCGGATGCATCTTTCTTGGTGTTTAACTTTAGTGAACGAAAGAGGAAGACTAAAACTTCGGACATCCTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTTCAATATGAAGGGTGTTCACTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGTTGGTTGTCATTGGAGAGACAGAAAAATGTATTGTTGATGAACTGTGAACGAGGTGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTTTTATTGTACCGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTATAGGCAAGCTCCTAGAGAACTTTTCCATGTCCTATCTCCTGTAAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATTTAGGTTCTGATTGGCCTCCACCTGATACGCCCCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGATGGAGGAAAGGGGTGGAGGCCCATCATACGCATTTACAGTCAGGACCCATTAACACCACGAAATAGAAGCCCAAAACTTGTCTTCTCGAGCGCAAAGAAGGAAAGACATGGTTGCCAGTATCTACAGGCAGCAAGCAGATTAGTAAAAGTGGATGTCCATTGTCACATTCAAGGCGATGTTGTTCTTGAATGCATCCGTTTAGATGGAGATCTAATACATGAGGAAGTGATGTTTAGAATTATGTTTCACACAGCATTTGTGCACTCAAACAGTTTGAAGCTCAATTGTGACGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTTCTAAAGATTTTAGAGCAGAGGTACTTTTTCTGGATGCTAATCATGTTGTGCCAAACAACCGTTCCTCGACCAGAAGTGATGATAAAATTGAGATTGAAAGCAATTCAACTGAGGAATTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGATTATGATGTTCAAACGGTACATGCTAACGAAACAGATTATATTGACCATCAAGCAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCAAAACTTGGACAAGAAGATAGATTGTAACGTTGAAGCAGTGAAGGACATTACTGTTGATGATGTAACTTTCAAGACAGCTGAAAAAGTGGACTCTGGTCTTCAAGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCAAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGCAATCAAGGAACTGATTGATGATGCTTATGACAAGTTGGAAGGGGTGCAGCATAAAGGGTACGGAGAAGATACTGCCATTCCACACTTTGAATCAAAGGTTCCTTCGAAAAAGTTGGAAGCTGATGCGTGGAGGCTTAAATTTGAGAAGTTGCAATCAACGTCAAGGAAACAGCCGTCATCAACAATTAAGCCAATAAATCATGCAATTGTAGCTAAACAGAAAACCAAACAGCCAGAAGATCAGTTTCTTGTAAAACAGGCCAAACCAAATACTCTTTCTAGATTGATTTCACATGACAAAGAACCTTACACAAACTCCATGCATTTGTTTTATCCACCATCAAGGCATACTAGTGACTCAGCAACAGCTATTAGTTCTCCTACTAAAGATTTTTATTCATATTCATATTCAACTTCAAAATCTGCTTCTGCTTCTGCTACTTCAGGACTGCTGCTGTCTGATACAGCTGATGAACAAAAAAGTGACAAGGTGAGTCCTAAGAAACCTTTATGTTCTGCAACAGAGATTCTCAAGAGTAAACCACAATCACCACTTGACTCCTCAAGACCATTGCCAAACGCTGTTCAGTATCAAGATCCTACTCTTCCTCTATCTGCTACTACACTTCTACAGCCACCAGCTCTTCAGGCCGACACATCTTTCTTGCATGCATCATCTCCTAAATCTTCTTTGTCTCCCTCTACACATTATCACAAAAATGCAAGATCTCCTCCTCCAGCTCCGCCTCCACCACCACCTCCTCCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCAGCACCACCTCCACCTCCCATACGTAGAGCTCAACCACAATTACCTCCCCCACGACCACCCTCATCACATGGAGCTCTGCTTTCTCCATGCCTATCAAATGCTGGAGCTTTTCCACCACCCCCTCCGCCACCTCCTCCAATTCAGAGGAGAGCTCCTCCACATTTAACCCAGGGGCAACAGGCTTTAACATCTGCAACAGCCTGTGTTGTCTCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTCCTCAACCTACAACTGGTCCCCTTCCCCCGGTTCCTTCTTCTTCTTCTAAACCTTCAGGAGGTATGACTCCGCACCTGGGAGGTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTGAGGGGACGTGGGTTCTCGCGGTCAACTGGGATGGGGGTGGCTACTACTGGGCTTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGATTCAGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGATTGTCCCTAAACCTATTGTTGATTCCGGAGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGATATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTACTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAGCTTCTCAAGGGATACTCTGGTGACAAGGATAAACTTGGCAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCAAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGATAGCAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTCGCAAATTGAAGGAGATAATGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACAGCTAGGGGTTCGGCAATTGGATTCAGGTTGGACAGCCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACATTGGTAGCTTAGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAGGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTTCATAAGATATTGGAAGGATTTGTTACTCTTGCCGAGATGGAGGTGGAATCTGTGACAGTTCTTTACTCAGTGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGCGAGGATCCAGCCCGTTGTCCATTTGAACAAGTTACAGGAACCCTCTTCCATTTTACAAGGTCCTTTTTGAAAGCACATGAAGAGAACTGCAAGCAGTTAGAAATGGAGATGAGAAAGATGAGAAAATAG 3888 42.9 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTEVLEEDEYRVYLGSIIPKLQDHFPDASFLVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFHVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDTPLILDCLILRELPMLDGGKGWRPIIRIYSQDPLTPRNRSPKLVFSSAKKERHGCQYLQAASRLVKVDVHCHIQGDVVLECIRLDGDLIHEEVMFRIMFHTAFVHSNSLKLNCDEVDVLWDAKEQFSKDFRAEVLFLDANHVVPNNRSSTRSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQTVHANETDYIDHQAVWKEDADPPTFQRCKSFGGSQNLDKKIDCNVEAVKDITVDDVTFKTAEKVDSGLQVVKDIVVDYGDKKPNPLLFSVNVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIPHFESKVPSKKLEADAWRLKFEKLQSTSRKQPSSTIKPINHAIVAKQKTKQPEDQFLVKQAKPNTLSRLISHDKEPYTNSMHLFYPPSRHTSDSATAISSPTKDFYSYSYSTSKSASASATSGLLLSDTADEQKSDKVSPKKPLCSATEILKSKPQSPLDSSRPLPNAVQYQDPTLPLSATTLLQPPALQADTSFLHASSPKSSLSPSTHYHKNARSPPPAPPPPPPPPPKSSSLVCGNTPKHSAPPAPPPPPIRRAQPQLPPPRPPSSHGALLSPCLSNAGAFPPPPPPPPPIQRRAPPHLTQGQQALTSATACVVSSSLPSPICEAPSPPQPTTGPLPPVPSSSSKPSGGMTPHLGGKGVSSSTDVKTSSIVRGRGFSRSTGMGVATTGLQRSSLKPLHWSKVTRVLQGSLWEELQRCGDSESAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIAEFKKSLNTVNSVCQEVKNSRKLKEIMKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDIGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISETFHKILEGFVTLAEMEVESVTVLYSVAGRNADALALYFGEDPARCPFEQVTGTLFHFTRSFLKAHEENCKQLEMEMRKMRK 1295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30651277 30660776 + CcPI632755_01g017940.1 Cco01g1794 170656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1794 1295 ProSiteProfiles Formin homology-2 (FH2) domain profile. 899 1295 IPR015425 -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 708 725 - -
Cco01g1794 1295 SMART it6_source 899 1294 IPR015425 -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 812 836 - -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 871 899 - -
Cco01g1794 1295 SMART PTEN_C2_2 198 338 IPR014020 -
Cco01g1794 1295 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cco01g1794 1295 Gene3D - 205 336 - -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 755 782 - -
Cco01g1794 1295 Coils Coil 1182 1202 - -
Cco01g1794 1295 Pfam C2 domain of PTEN tumour-suppressor protein 198 336 IPR014020 -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 662 684 - -
Cco01g1794 1295 Pfam Formin Homology 2 Domain 907 1275 IPR015425 -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 642 684 - -
Cco01g1794 1295 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Cco01g1794 1295 Gene3D Formin, FH2 domain 901 1286 IPR042201 -
Cco01g1794 1295 PANTHER FORMIN-J 797 1293 IPR051144 -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 728 746 - -
Cco01g1794 1295 SUPERFAMILY Formin homology 2 domain (FH2 domain) 797 1295 - -
Cco01g1794 1295 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 837 857 - -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 793 810 - -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 708 899 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1794 Cco-Chr1:30651277 Cco06g1422 Cco-Chr6:24739804 1.20E-251 dispersed
Cco01g1794 Cco-Chr1:30651277 Cco06g1795 Cco-Chr6:28351065 1.20E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1794 K28090 - csv:101221127 2136.3