Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1794 ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATCGCGGAGAGAGTGTACGTTTTTGATTGTTGCTTCTCTACCGAGGTGTTGGAGGAGGATGAGTACAGAGTGTACTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCGGATGCATCTTTCTTGGTGTTTAACTTTAGTGAACGAAAGAGGAAGACTAAAACTTCGGACATCCTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTTCAATATGAAGGGTGTTCACTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGTTGGTTGTCATTGGAGAGACAGAAAAATGTATTGTTGATGAACTGTGAACGAGGTGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTTTTATTGTACCGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTATAGGCAAGCTCCTAGAGAACTTTTCCATGTCCTATCTCCTGTAAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATTTAGGTTCTGATTGGCCTCCACCTGATACGCCCCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGATGGAGGAAAGGGGTGGAGGCCCATCATACGCATTTACAGTCAGGACCCATTAACACCACGAAATAGAAGCCCAAAACTTGTCTTCTCGAGCGCAAAGAAGGAAAGACATGGTTGCCAGTATCTACAGGCAGCAAGCAGATTAGTAAAAGTGGATGTCCATTGTCACATTCAAGGCGATGTTGTTCTTGAATGCATCCGTTTAGATGGAGATCTAATACATGAGGAAGTGATGTTTAGAATTATGTTTCACACAGCATTTGTGCACTCAAACAGTTTGAAGCTCAATTGTGACGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTTCTAAAGATTTTAGAGCAGAGGTACTTTTTCTGGATGCTAATCATGTTGTGCCAAACAACCGTTCCTCGACCAGAAGTGATGATAAAATTGAGATTGAAAGCAATTCAACTGAGGAATTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGATTATGATGTTCAAACGGTACATGCTAACGAAACAGATTATATTGACCATCAAGCAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCAAAACTTGGACAAGAAGATAGATTGTAACGTTGAAGCAGTGAAGGACATTACTGTTGATGATGTAACTTTCAAGACAGCTGAAAAAGTGGACTCTGGTCTTCAAGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCAAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGCAATCAAGGAACTGATTGATGATGCTTATGACAAGTTGGAAGGGGTGCAGCATAAAGGGTACGGAGAAGATACTGCCATTCCACACTTTGAATCAAAGGTTCCTTCGAAAAAGTTGGAAGCTGATGCGTGGAGGCTTAAATTTGAGAAGTTGCAATCAACGTCAAGGAAACAGCCGTCATCAACAATTAAGCCAATAAATCATGCAATTGTAGCTAAACAGAAAACCAAACAGCCAGAAGATCAGTTTCTTGTAAAACAGGCCAAACCAAATACTCTTTCTAGATTGATTTCACATGACAAAGAACCTTACACAAACTCCATGCATTTGTTTTATCCACCATCAAGGCATACTAGTGACTCAGCAACAGCTATTAGTTCTCCTACTAAAGATTTTTATTCATATTCATATTCAACTTCAAAATCTGCTTCTGCTTCTGCTACTTCAGGACTGCTGCTGTCTGATACAGCTGATGAACAAAAAAGTGACAAGGTGAGTCCTAAGAAACCTTTATGTTCTGCAACAGAGATTCTCAAGAGTAAACCACAATCACCACTTGACTCCTCAAGACCATTGCCAAACGCTGTTCAGTATCAAGATCCTACTCTTCCTCTATCTGCTACTACACTTCTACAGCCACCAGCTCTTCAGGCCGACACATCTTTCTTGCATGCATCATCTCCTAAATCTTCTTTGTCTCCCTCTACACATTATCACAAAAATGCAAGATCTCCTCCTCCAGCTCCGCCTCCACCACCACCTCCTCCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCAGCACCACCTCCACCTCCCATACGTAGAGCTCAACCACAATTACCTCCCCCACGACCACCCTCATCACATGGAGCTCTGCTTTCTCCATGCCTATCAAATGCTGGAGCTTTTCCACCACCCCCTCCGCCACCTCCTCCAATTCAGAGGAGAGCTCCTCCACATTTAACCCAGGGGCAACAGGCTTTAACATCTGCAACAGCCTGTGTTGTCTCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTCCTCAACCTACAACTGGTCCCCTTCCCCCGGTTCCTTCTTCTTCTTCTAAACCTTCAGGAGGTATGACTCCGCACCTGGGAGGTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTGAGGGGACGTGGGTTCTCGCGGTCAACTGGGATGGGGGTGGCTACTACTGGGCTTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGATTCAGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGATTGTCCCTAAACCTATTGTTGATTCCGGAGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGATATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTACTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAGCTTCTCAAGGGATACTCTGGTGACAAGGATAAACTTGGCAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCAAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGATAGCAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTCGCAAATTGAAGGAGATAATGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACAGCTAGGGGTTCGGCAATTGGATTCAGGTTGGACAGCCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACATTGGTAGCTTAGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAGGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTTCATAAGATATTGGAAGGATTTGTTACTCTTGCCGAGATGGAGGTGGAATCTGTGACAGTTCTTTACTCAGTGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGCGAGGATCCAGCCCGTTGTCCATTTGAACAAGTTACAGGAACCCTCTTCCATTTTACAAGGTCCTTTTTGAAAGCACATGAAGAGAACTGCAAGCAGTTAGAAATGGAGATGAGAAAGATGAGAAAATAG 3888 42.9 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTEVLEEDEYRVYLGSIIPKLQDHFPDASFLVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFHVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDTPLILDCLILRELPMLDGGKGWRPIIRIYSQDPLTPRNRSPKLVFSSAKKERHGCQYLQAASRLVKVDVHCHIQGDVVLECIRLDGDLIHEEVMFRIMFHTAFVHSNSLKLNCDEVDVLWDAKEQFSKDFRAEVLFLDANHVVPNNRSSTRSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQTVHANETDYIDHQAVWKEDADPPTFQRCKSFGGSQNLDKKIDCNVEAVKDITVDDVTFKTAEKVDSGLQVVKDIVVDYGDKKPNPLLFSVNVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIPHFESKVPSKKLEADAWRLKFEKLQSTSRKQPSSTIKPINHAIVAKQKTKQPEDQFLVKQAKPNTLSRLISHDKEPYTNSMHLFYPPSRHTSDSATAISSPTKDFYSYSYSTSKSASASATSGLLLSDTADEQKSDKVSPKKPLCSATEILKSKPQSPLDSSRPLPNAVQYQDPTLPLSATTLLQPPALQADTSFLHASSPKSSLSPSTHYHKNARSPPPAPPPPPPPPPKSSSLVCGNTPKHSAPPAPPPPPIRRAQPQLPPPRPPSSHGALLSPCLSNAGAFPPPPPPPPPIQRRAPPHLTQGQQALTSATACVVSSSLPSPICEAPSPPQPTTGPLPPVPSSSSKPSGGMTPHLGGKGVSSSTDVKTSSIVRGRGFSRSTGMGVATTGLQRSSLKPLHWSKVTRVLQGSLWEELQRCGDSESAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIAEFKKSLNTVNSVCQEVKNSRKLKEIMKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDIGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISETFHKILEGFVTLAEMEVESVTVLYSVAGRNADALALYFGEDPARCPFEQVTGTLFHFTRSFLKAHEENCKQLEMEMRKMRK 1295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30651277 30660776 + CcPI632755_01g017940.1 Cco01g1794 170656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1794 1295 ProSiteProfiles Formin homology-2 (FH2) domain profile. 899 1295 IPR015425 -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 708 725 - -
Cco01g1794 1295 SMART it6_source 899 1294 IPR015425 -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 812 836 - -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 871 899 - -
Cco01g1794 1295 SMART PTEN_C2_2 198 338 IPR014020 -
Cco01g1794 1295 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cco01g1794 1295 Gene3D - 205 336 - -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 755 782 - -
Cco01g1794 1295 Coils Coil 1182 1202 - -
Cco01g1794 1295 Pfam C2 domain of PTEN tumour-suppressor protein 198 336 IPR014020 -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 662 684 - -
Cco01g1794 1295 Pfam Formin Homology 2 Domain 907 1275 IPR015425 -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 642 684 - -
Cco01g1794 1295 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Cco01g1794 1295 Gene3D Formin, FH2 domain 901 1286 IPR042201 -
Cco01g1794 1295 PANTHER FORMIN-J 797 1293 IPR051144 -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 728 746 - -
Cco01g1794 1295 SUPERFAMILY Formin homology 2 domain (FH2 domain) 797 1295 - -
Cco01g1794 1295 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 837 857 - -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 793 810 - -
Cco01g1794 1295 MobiDBLite consensus disorder prediction 708 899 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1794 K28090 - - csv:101221127 2136.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1794 Cco-Chr1:30651277 Cco06g1422 Cco-Chr6:24739804 1.20E-251 dispersed
Cco01g1794 Cco-Chr1:30651277 Cco06g1795 Cco-Chr6:28351065 1.20E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco07g0242 . 181 1052 FH2 protein (formin) Gene Family AT3G25500 52.1 6.0e-193 671.8
Cco11g0111 . 459 935 FH2 protein (formin) Gene Family AT3G25500 66.9 2.2e-166 583.6
Cco02g1315 . 438 893 FH2 protein (formin) Gene Family AT3G25500 60.5 1.7e-142 504.2
Cco03g1771 . 495 892 FH2 protein (formin) Gene Family AT3G25500 51.7 4.0e-104 376.7
Cco07g0242 . 615 1069 FH2 protein (formin) Gene Family AT2G43800 60.3 5.4e-142 502.3
Cco02g1315 . 472 909 FH2 protein (formin) Gene Family AT2G43800 55.3 1.7e-124 444.1
Cco02g0897 . 452 591 FH2 protein (formin) Gene Family AT4G15200 71.1 4.0e-48 189.5
Cco05g1695 . 550 696 FH2 protein (formin) Gene Family AT4G15200 66.7 3.4e-47 186.4
Cco05g1695 . 551 987 FH2 protein (formin) Gene Family AT5G54650 69.2 3.4e-168 589.3
Cco02g0897 . 452 908 FH2 protein (formin) Gene Family AT5G54650 63.2 5.4e-158 555.4
Cco07g0242 . 626 1027 FH2 protein (formin) Gene Family AT5G54650 50.8 2.9e-103 373.6
Cco02g1315 . 31 912 FH2 protein (formin) Gene Family AT5G67470 58.3 3.4e-237 818.5
Cco07g0242 . 607 1069 FH2 protein (formin) Gene Family AT5G67470 58.9 9.9e-136 481.5
Cco11g0111 . 472 917 FH2 protein (formin) Gene Family AT5G67470 60.9 3.3e-131 466.5
Cco03g1771 . 495 894 FH2 protein (formin) Gene Family AT5G67470 50.9 1.2e-104 378.3
Cco05g2759 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.5 2.5e-126 450.3
Cco07g0242 . 647 1028 FH2 protein (formin) Gene Family AT5G48360 52.6 4.0e-101 366.3
Cco02g1315 . 496 870 FH2 protein (formin) Gene Family AT5G48360 50.7 1.2e-89 328.2
Cco02g1315 . 476 869 FH2 protein (formin) Gene Family AT3G05470 51.6 4.7e-106 382.9
Cco05g1695 . 556 970 FH2 protein (formin) Gene Family AT3G05470 50.6 4.7e-106 382.9
Cco07g0234 . 952 1263 FH2 protein (formin) Gene Family AT1G42980 51.1 2.0e-69 259.6
Cco07g0234 . 1 1270 FH2 protein (formin) Gene Family AT1G31810 65.3 0.0e+00 1223.8
Cco06g1795 . 19 436 FH2 protein (formin) Gene Family AT1G31810 63.9 7.9e-144 508.8
Cco06g1795 . 121 442 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Cco01g1794 . 982 1292 FH2 protein (formin) Gene Family AT5G07650 70.1 1.9e-119 427.2
Cco05g1867 . 1081 1403 FH2 protein (formin) Gene Family AT5G07650 65.0 2.8e-110 396.7
Cco06g1422 . 936 1255 FH2 protein (formin) Gene Family AT5G07650 62.9 6.3e-110 395.6
Cco07g0234 . 936 1267 FH2 protein (formin) Gene Family AT5G07650 59.6 4.5e-108 389.4
Cco06g1795 . 48 435 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Cco01g1794 . 905 1292 FH2 protein (formin) Gene Family AT5G07770 63.0 4.9e-128 455.3
Cco05g1867 . 1005 1395 FH2 protein (formin) Gene Family AT5G07770 59.4 7.2e-119 424.9
Cco06g1422 . 859 1247 FH2 protein (formin) Gene Family AT5G07770 57.3 2.5e-116 416.4
Cco07g0234 . 872 1261 FH2 protein (formin) Gene Family AT5G07770 55.2 3.7e-115 412.5
Cco05g1867 . 997 1403 FH2 protein (formin) Gene Family AT3G32400 76.2 7.5e-170 594.0
Cco06g1422 . 843 1256 FH2 protein (formin) Gene Family AT3G32400 66.6 4.3e-149 525.0
Cco06g1795 . 48 442 FH2 protein (formin) Gene Family AT3G32400 65.2 8.7e-142 500.7
Cco07g0234 . 872 1266 FH2 protein (formin) Gene Family AT3G32400 65.5 1.2e-140 496.9
Cco01g1794 . 875 1295 FH2 protein (formin) Gene Family AT3G32400 58.1 1.1e-131 467.2
Cco05g1867 . 1 1403 FH2 protein (formin) Gene Family AT2G25050 51.1 0.0e+00 1156.4
Cco06g1422 . 1 1256 FH2 protein (formin) Gene Family AT2G25050 50.6 1.0e-294 1010.0
Cco06g1795 . 19 442 FH2 protein (formin) Gene Family AT2G25050 60.4 5.4e-142 502.7
Cco06g1795 . 49 442 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Cco01g1794 . 906 1295 FH2 protein (formin) Gene Family AT5G07780 57.9 3.6e-113 405.6
Cco05g1867 . 1006 1396 FH2 protein (formin) Gene Family AT5G07780 54.3 2.0e-103 373.2
Cco06g1422 . 866 1255 FH2 protein (formin) Gene Family AT5G07780 53.8 1.1e-101 367.5
Cco07g0234 . 873 1262 FH2 protein (formin) Gene Family AT5G07780 52.0 1.1e-101 367.5
Cco06g1795 . 5 451 FH2 protein (formin) Gene Family AT5G07740 79.1 2.6e-187 653.7
Cco06g1795 . 120 449 FH2 protein (formin) Gene Family AT5G07760 74.4 3.3e-128 456.4
Cco01g1794 . 981 1295 FH2 protein (formin) Gene Family AT5G07760 69.3 4.4e-117 419.5
Cco06g1422 . 935 1255 FH2 protein (formin) Gene Family AT5G07760 64.7 3.1e-110 396.7
Cco05g1867 . 1080 1412 FH2 protein (formin) Gene Family AT5G07760 64.0 9.0e-110 395.2
Cco07g0234 . 946 1267 FH2 protein (formin) Gene Family AT5G07760 60.1 5.1e-105 379.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82