Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1797 ATGGAAATGGGTCACATTTCATATGGTTCATTGGAGAAAGATCTGCAGGTGACGTGGCTTCTTCGCCATCTCTACATAACTATCCAAACCTCACCATTCCAACATCCCCTTTTGCACTTTTTTCCTATCTATTCTCTCTCTCTTTTGCTAGCGAACGGAATCGCGTTTTGTTTAGGTTCTGGTTTAACGGTTATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGGGGAAAGAATGGGGGAGATGGGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGTTCTGCTAGGCAGGTCATTGATGCTTTGAATGCGGAGGGACCTGAAATTGATATTATACTCTCGGAAGTTGATCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACCCGGGATGAAGAGCTCCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCACATGTGGAGAAGAAGACGCATGCTTGGACTGGCGGAAAAAAACATTTTGAATTATGAATTTGATATGGTGGCATCAGACCCAAGCGATGCTAATACGAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACAAATCCAGATATGGCAATTGCTGCGACCCATCAGGAAGATGAGTCTGGTATTGCCGCCGCACTTGTAGAGCCTCCTGCTGTTCATACAGTGAAACATCAGCCAGATGTACCTGGAATCAGTGAGCGCCGAACGGGGCAACCTTCATCATGTCCTAGAAAGAGTGAACTGAAGATTGGGGAATCATCTGCATTCTTTACCTATGTCAAATCAAGAGCTGTGAAAAATAAGGCAGTAGATGTTGAAGATAATGCTAAACGACTTTTGCTGGACGAAAATCATCAAGAAACTAGTCATCGTGCAGTTCATCTTCCCCCAATACAAGAAAATGGGGAGGCCTTGGAAAGCCATTCCCAAGGAGACGAATTCCCAAGCAGTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACACCACCTGCTGGCACAGAAGTTCACAGGGAAAGAAACATCAATGAAGAAAATTGCTCTCAAGCCCTTGTGCATCCTCGAGATGGATCTCAGGTTGATATGTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCTTTTTATATGCCGGAAGGTATGATGTCGGCGCAACTGTACCAAAAAAACCTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTATGGACATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCGTCTTATCCTTATTACCCTATGAATATATGTTTACAACCTGGTCAAATGCCAACTAGCACTACTCATATTCATTCATGGCCATCTTTTGGGAATTCATCTTCCAATGAAGCAAAATCGAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAACGCTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGGGGTCAGTTTGTGAGAAAGGTAAATGGTGTCAATGTAGATCTTAATGGACAACCTGCATCTGTTGATGATGTCGAGGATGAAGACGAGGAGGAGGAACTACTATCAAGGGATTCCTCTCATGAGGATGATGGGAAGCAAGCAAGTGCTCATATTTACTTCTTGCAATCTCAATGTTGGCAGGAGATCCGATTCTGCCTGCTGTTACATGTCCATTTGCTTGCACCAGGTCCTTGTAGCCTTGTGGTTACTGGTGGCTTGAAACCGCTTCTCTTCAGCGTCGAATCAATCATCGAAAATACATTGACCAATATTGGACATTTGCAGAGAAGAATAGCTTGTTGGAATTTTATTCAAAAGAGCCAAGATCTTACCCTACCCCCAAACCCAACTTATGTAGTTTGTGAAAGATCTGCATCAAAAGATCGACCAATTTTATCAGAACTGAGCTTGTCTCAGTTCCAATCTGCTGCTACTGGAATATCCATCTATAGTATAATAAATCCAAACAAGAATTCGAGCTGCCAAAACGAGACATTCAGCATAGCTGCAATGCTTCTTGCTGCCTCTCTCTCTGAGATACAAGCTAAACACTGCCATCTTGTTTCATTTTCCAATTTGAAGGCAGTACTTTCTGTTGAGCTAATAACAGTGATCGATTCAATTGTGCGACTTGTTGCAGTAGTTGACTGA 2403 42.74 MEMGHISYGSLEKDLQVTWLLRHLYITIQTSPFQHPLLHFFPIYSLSLLLANGIAFCLGSGLTVMDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDEELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPDMAIAATHQEDESGIAAALVEPPAVHTVKHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRAVKNKAVDVEDNAKRLLLDENHQETSHRAVHLPPIQENGEALESHSQGDEFPSSSFPDSFSVERSCTPPAGTEVHRERNINEENCSQALVHPRDGSQVDMSGLPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPTSTTHIHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASVDDVEDEDEEEELLSRDSSHEDDGKQASAHIYFLQSQCWQEIRFCLLLHVHLLAPGPCSLVVTGGLKPLLFSVESIIENTLTNIGHLQRRIACWNFIQKSQDLTLPPNPTYVVCERSASKDRPILSELSLSQFQSAATGISIYSIINPNKNSSCQNETFSIAAMLLAASLSEIQAKHCHLVSFSNLKAVLSVELITVIDSIVRLVAVVD 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30671175 30677555 - CcPI632755_01g017970.1 Cco01g1797 170659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1797 800 SMART REC_2 96 211 IPR001789 GO:0000160(InterPro)
Cco01g1797 800 Pfam CCT motif 535 577 IPR010402 GO:0005515(InterPro)
Cco01g1797 800 MobiDBLite consensus disorder prediction 381 400 - -
Cco01g1797 800 SUPERFAMILY CheY-like 93 221 IPR011006 -
Cco01g1797 800 ProSiteProfiles CCT domain profile. 535 577 IPR010402 GO:0005515(InterPro)
Cco01g1797 800 MobiDBLite consensus disorder prediction 374 408 - -
Cco01g1797 800 MobiDBLite consensus disorder prediction 241 263 - -
Cco01g1797 800 MobiDBLite consensus disorder prediction 293 317 - -
Cco01g1797 800 Gene3D - 96 307 - -
Cco01g1797 800 ProSiteProfiles Response regulatory domain profile. 97 215 IPR001789 GO:0000160(InterPro)
Cco01g1797 800 Pfam Response regulator receiver domain 98 209 IPR001789 GO:0000160(InterPro)
Cco01g1797 800 PANTHER TWO-COMPONENT RESPONSE REGULATOR 94 267 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1797 Cco-Chr1:30671175 Cco04g1069 Cco-Chr4:26178465 1.40E-13 dispersed
Cco09g1803 Cco-Chr9:30934741 Cco01g1797 Cco-Chr1:30671175 3.30E-06 dispersed
Cco11g1273 Cco-Chr11:25229191 Cco01g1797 Cco-Chr1:30671175 9.90E-06 dispersed
Cco01g1797 Cco-Chr1:30671175 Cco06g1405 Cco-Chr6:24515754 3.10E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58655 PF00072 Response_reg 1.40E-16 CL0304 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1797 K12127 - csv:101220107 982.245