Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1800 ATGAACCGTACATTCAATTCATACCCAGACGAAAATTATGCAAATGTTAGGAGATTGATGAGGCAGACTGAGGATGATGATCACAAGAACCTATCGGACAAGGATTCGCACTGTGATTTGAAGAGCAACCCCGAATTGAAATGTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTGTGGTTTTGATGATGTTCATTTCTGTGATATTTTCGGTCTCTGTGGTTCTTAGAGATCCACCATCGGATGCTGTAATTGAAGGTTCAGATGTGTGGATTCCTCAGTGGAACTCTGACCCAGTAGATTCTAAGGTTGGAGATCTTCCTACGGTTATACAGCCAGTTGATAAACTGCTTAGTGGCCTTCTTTCTGCCAAACATGGGGTTGATTCTTGTCTCAGTAGGTACAATTCAGTTGCTTATCAACGCAAGCTGGCTTACGAACCCTCTTCTTACTTAATCTCCAAATTGCGGAGTTATGAAGATCTTCATAAGCGTTGTGGAGTTCATACTGAATCTTACAACAAAACTTTGGAGCAGCTAAAGTCTAACGGCAGTAGCAGCTCCTCAGATTGTAAATATGTTGTTTGGATTTCCTTCAGTGGATTAGGGAATAGAATACTAACCCTCGCTTCGACGTTTCTTTATGCTCTCCTCACAAATCGTATTCTTCTTGTTGACCCTGGAACTGACATGGCGGATCTCTTCTGTGAACCATTTCCTGAGGTTTCCTGGTTTCTTCCCCGAGATTTCCCATTAAAAGATGAGTTCAGCAAATTCAACCAGAACTCTCCTAATTGCTATGGGAAAATAATGAAGAATAGCATGACCCCAGATTTAAGTGGAATGATCTTGCCAGCTGTAGTTTATCTTCATTTGGTCCATGATTATGATGCTGATGATAAGCTTTTCTTCTGTGATCAGGACCAAGCTCTTCTGCAGCAATCTCCTTGGCTTGTTATGAAAACAGACAACTATTTTGTCCCATCTCTCTTTTTGATCCCATCATTTGAGAAAGAACTTAATGATCTTTTCCCAAATAAAGATACAGTTTTCCACTTCTTGGGTCGATATCTGTTTCACCCCGTGAATTCGGTTTGGGGTCTGATTACAAGATATTATCAGGCTTACTTGGCTAGAGCTAGCGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGGACTGGACCTTTTCAACACATCCTGGATCAGGTTCTGGACTGTACCCTGAAGGAGAATCTGTTGCCACAAACGGAGAGGCAAACGAATGTTGTTGCTCCAGCTAGTAATCAAAAGTCAAAGGCTGTGCTGATAACTTCCTTGAGCGCTGGTTACTTCGAGAAGTTGAGAGATATTTACTGGGAGAATCCGACGGTAACGGGAGAGAGAATTAGTTTCTACCAACCAAGTCATGAGGAACACCAGCAAACGGAGAAAAGTATACATAACCAGAAGGCATTGGCAGAGATGTATTTGTTAAGTACAACTGATGTATTGGTCACCAGTTCATGGTCGACCTTCGGATACGTGGCTCAGGGTCTTGGGGGTCTGAAACCATGGATATTGTACAAACCTGAAAATCGTACTGCGCCCGATCCACCTTGCCGTCGAGCCATGTCCATGGAGCCATGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTGGACACTGGTAAACTTGTTCCTCATGTGAGGCATTGCGAGGACATGGCCTGGGGACTTAAGTTGGTTGATCAATATGATTGA 1758 42.83 MNRTFNSYPDENYANVRRLMRQTEDDDHKNLSDKDSHCDLKSNPELKCGFSSIRVMGMFVVLMMFISVIFSVSVVLRDPPSDAVIEGSDVWIPQWNSDPVDSKVGDLPTVIQPVDKLLSGLLSAKHGVDSCLSRYNSVAYQRKLAYEPSSYLISKLRSYEDLHKRCGVHTESYNKTLEQLKSNGSSSSSDCKYVVWISFSGLGNRILTLASTFLYALLTNRILLVDPGTDMADLFCEPFPEVSWFLPRDFPLKDEFSKFNQNSPNCYGKIMKNSMTPDLSGMILPAVVYLHLVHDYDADDKLFFCDQDQALLQQSPWLVMKTDNYFVPSLFLIPSFEKELNDLFPNKDTVFHFLGRYLFHPVNSVWGLITRYYQAYLARASERIGIQIRVFDTGTGPFQHILDQVLDCTLKENLLPQTERQTNVVAPASNQKSKAVLITSLSAGYFEKLRDIYWENPTVTGERISFYQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMAWGLKLVDQYD 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30687078 30689672 + CcPI632755_01g018000.1 Cco01g1800 170662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1800 585 Gene3D - 368 532 - -
Cco01g1800 585 Gene3D - 188 241 - -
Cco01g1800 585 PANTHER FUCOSYLTRANSFERASE 2-RELATED 51 583 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0008417(PANTHER)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
Cco01g1800 585 FunFam Galactoside 2-alpha-L-fucosyltransferase 189 240 - -
Cco01g1800 585 Pfam Xyloglucan fucosyltransferase 110 554 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1800 Cco-Chr1:30687078 Cco07g1152 Cco-Chr7:25233045 3.70E-144 dispersed
Cco01g1800 Cco-Chr1:30687078 Cco05g2677 Cco-Chr5:34780307 1.30E-197 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1800 K13681 - csv:101219153 1098.57