Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1800 ATGAACCGTACATTCAATTCATACCCAGACGAAAATTATGCAAATGTTAGGAGATTGATGAGGCAGACTGAGGATGATGATCACAAGAACCTATCGGACAAGGATTCGCACTGTGATTTGAAGAGCAACCCCGAATTGAAATGTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTGTGGTTTTGATGATGTTCATTTCTGTGATATTTTCGGTCTCTGTGGTTCTTAGAGATCCACCATCGGATGCTGTAATTGAAGGTTCAGATGTGTGGATTCCTCAGTGGAACTCTGACCCAGTAGATTCTAAGGTTGGAGATCTTCCTACGGTTATACAGCCAGTTGATAAACTGCTTAGTGGCCTTCTTTCTGCCAAACATGGGGTTGATTCTTGTCTCAGTAGGTACAATTCAGTTGCTTATCAACGCAAGCTGGCTTACGAACCCTCTTCTTACTTAATCTCCAAATTGCGGAGTTATGAAGATCTTCATAAGCGTTGTGGAGTTCATACTGAATCTTACAACAAAACTTTGGAGCAGCTAAAGTCTAACGGCAGTAGCAGCTCCTCAGATTGTAAATATGTTGTTTGGATTTCCTTCAGTGGATTAGGGAATAGAATACTAACCCTCGCTTCGACGTTTCTTTATGCTCTCCTCACAAATCGTATTCTTCTTGTTGACCCTGGAACTGACATGGCGGATCTCTTCTGTGAACCATTTCCTGAGGTTTCCTGGTTTCTTCCCCGAGATTTCCCATTAAAAGATGAGTTCAGCAAATTCAACCAGAACTCTCCTAATTGCTATGGGAAAATAATGAAGAATAGCATGACCCCAGATTTAAGTGGAATGATCTTGCCAGCTGTAGTTTATCTTCATTTGGTCCATGATTATGATGCTGATGATAAGCTTTTCTTCTGTGATCAGGACCAAGCTCTTCTGCAGCAATCTCCTTGGCTTGTTATGAAAACAGACAACTATTTTGTCCCATCTCTCTTTTTGATCCCATCATTTGAGAAAGAACTTAATGATCTTTTCCCAAATAAAGATACAGTTTTCCACTTCTTGGGTCGATATCTGTTTCACCCCGTGAATTCGGTTTGGGGTCTGATTACAAGATATTATCAGGCTTACTTGGCTAGAGCTAGCGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGGACTGGACCTTTTCAACACATCCTGGATCAGGTTCTGGACTGTACCCTGAAGGAGAATCTGTTGCCACAAACGGAGAGGCAAACGAATGTTGTTGCTCCAGCTAGTAATCAAAAGTCAAAGGCTGTGCTGATAACTTCCTTGAGCGCTGGTTACTTCGAGAAGTTGAGAGATATTTACTGGGAGAATCCGACGGTAACGGGAGAGAGAATTAGTTTCTACCAACCAAGTCATGAGGAACACCAGCAAACGGAGAAAAGTATACATAACCAGAAGGCATTGGCAGAGATGTATTTGTTAAGTACAACTGATGTATTGGTCACCAGTTCATGGTCGACCTTCGGATACGTGGCTCAGGGTCTTGGGGGTCTGAAACCATGGATATTGTACAAACCTGAAAATCGTACTGCGCCCGATCCACCTTGCCGTCGAGCCATGTCCATGGAGCCATGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTGGACACTGGTAAACTTGTTCCTCATGTGAGGCATTGCGAGGACATGGCCTGGGGACTTAAGTTGGTTGATCAATATGATTGA 1758 42.83 MNRTFNSYPDENYANVRRLMRQTEDDDHKNLSDKDSHCDLKSNPELKCGFSSIRVMGMFVVLMMFISVIFSVSVVLRDPPSDAVIEGSDVWIPQWNSDPVDSKVGDLPTVIQPVDKLLSGLLSAKHGVDSCLSRYNSVAYQRKLAYEPSSYLISKLRSYEDLHKRCGVHTESYNKTLEQLKSNGSSSSSDCKYVVWISFSGLGNRILTLASTFLYALLTNRILLVDPGTDMADLFCEPFPEVSWFLPRDFPLKDEFSKFNQNSPNCYGKIMKNSMTPDLSGMILPAVVYLHLVHDYDADDKLFFCDQDQALLQQSPWLVMKTDNYFVPSLFLIPSFEKELNDLFPNKDTVFHFLGRYLFHPVNSVWGLITRYYQAYLARASERIGIQIRVFDTGTGPFQHILDQVLDCTLKENLLPQTERQTNVVAPASNQKSKAVLITSLSAGYFEKLRDIYWENPTVTGERISFYQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMAWGLKLVDQYD 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30687078 30689672 + CcPI632755_01g018000.1 Cco01g1800 170662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1800 585 Gene3D - 368 532 - -
Cco01g1800 585 Gene3D - 188 241 - -
Cco01g1800 585 PANTHER FUCOSYLTRANSFERASE 2-RELATED 51 583 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0008417(PANTHER)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
Cco01g1800 585 FunFam Galactoside 2-alpha-L-fucosyltransferase 189 240 - -
Cco01g1800 585 Pfam Xyloglucan fucosyltransferase 110 554 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1800 K13681 - - csv:101219153 1098.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1800 Cco-Chr1:30687078 Cco07g1152 Cco-Chr7:25233045 3.70E-144 dispersed
Cco01g1800 Cco-Chr1:30687078 Cco05g2677 Cco-Chr5:34780307 1.30E-197 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g575 . . . . . . . . Cmo13g01199 . . . . . . Cpe20g00012 . . . . . . . . . . . . . . . Cone2ag0834 Cone16ag0180 . . Lsi02g00086 Csa01g00565 Chy12g01529 Cme12g01977 . . . . . . . . . . . Cma13g01145 . Car13g00974 . . . . . . . . . . Cla04g01186 Cam04g1243 Cec01g1754 Cco01g1800 Clacu04g1271 Cmu04g1250 Cre01g1543 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g2677 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 3.2e-158 555.4
Cco01g1800 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 2.2e-151 532.7
Cco05g2677 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 1.5e-165 579.7
Cco01g1800 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.3 7.8e-162 567.4
Cco07g1152 . 61 548 Xyloglucan Fucosyltransferase1 AT1G14100 50.1 2.2e-140 496.1
Cco05g2677 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.9 8.6e-139 490.7
Cco01g1800 . 106 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.4 2.4e-133 472.6
Cco02g0650 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 2.5e-192 668.7
Cco05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 5.2e-182 634.4
Cco08g1013 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.3 3.3e-168 588.2
Cco05g2677 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.5 1.4e-180 629.8
Cco01g1800 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.2 2.5e-169 592.4
Cco07g1152 . 67 548 Xyloglucan Fucosyltransferase1 AT2G03210 50.4 4.3e-137 485.3
Cco05g2677 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 5.4e-201 697.6
Cco01g1800 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 1.1e-188 656.8
Cco07g1152 . 55 548 Xyloglucan Fucosyltransferase1 AT2G03220 52.6 5.5e-153 538.1
Cco05g2677 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 1.9e-155 546.2
Cco01g1800 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.5 3.0e-145 512.3
Cco05g2677 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 1.6e-149 526.6
Cco01g1800 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.5 1.5e-139 493.4
Cco05g2677 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 55.1 1.1e-153 540.4
Cco01g1800 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 2.2e-143 506.1
Cco02g0650 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 1.7e-190 662.5
Cco05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 4.9e-185 644.4
Cco05g2677 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.5 1.4e-180 629.8
Cco01g1800 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.2 2.5e-169 592.4
Cco07g1152 . 67 548 Xyloglucan Fucosyltransferase1 AT2G03210 50.4 4.3e-137 485.3
Cco05g2677 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 5.4e-201 697.6
Cco01g1800 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 1.1e-188 656.8
Cco07g1152 . 55 548 Xyloglucan Fucosyltransferase1 AT2G03220 52.6 5.5e-153 538.1
Cco05g2677 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.5 1.4e-180 629.8
Cco01g1800 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.2 2.5e-169 592.4
Cco07g1152 . 67 548 Xyloglucan Fucosyltransferase1 AT2G03210 50.4 4.3e-137 485.3
Cco05g2677 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 55.1 1.1e-153 540.4
Cco01g1800 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 2.2e-143 506.1
Cco05g2677 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 1.6e-149 526.6
Cco01g1800 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.5 1.5e-139 493.4
Cco05g2677 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 3.2e-158 555.4
Cco01g1800 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 2.2e-151 532.7
Cco05g2677 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 1.5e-165 579.7
Cco01g1800 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.3 7.8e-162 567.4
Cco07g1152 . 61 548 Xyloglucan Fucosyltransferase1 AT1G14100 50.1 2.2e-140 496.1
Cco05g2677 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.9 8.6e-139 490.7
Cco01g1800 . 106 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.4 2.4e-133 472.6
Cco05g2677 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 1.9e-155 546.2
Cco01g1800 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.5 3.0e-145 512.3
Cco02g0650 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 1.7e-190 662.5
Cco05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 4.9e-185 644.4
Cco02g0650 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 2.5e-192 668.7
Cco05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 5.2e-182 634.4
Cco08g1013 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.3 3.3e-168 588.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29