Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1805 ATGGGAAGGGTTAAGCTGAAAATAAAGAAATTAGAGAGCACTGGTAGCAGGCAAGTGACTTACTCTAAGAGAAGAAATGGGATTATGAAGAAAGCAAGGGAGCTAGCTATACTCTGCGATATTGATATCGTTCTCCTCATGTTTTCGCCAAGTGGAAAGCCGGCGCTATATGAAGGTGAACGCAGCAACATCGAGGAGGTTATTACAAAATTTGCTGAATTGACTCCACAGGAGAGGGCAAAAAGGAAAATGGAAAGCCTTGAAGTGCTAAAGAAAACATTCAAGAAGTTAGACCACGATGTTAACATAAATGATTTTGTGGGTTCAAGCTCTCAAGATTTCGAGGAATTGACCAATGAAGTTGCCGTATTGCGAGATCAGATTGGCAAAGCGCATAAGAGACTGAGCTGTTGGAGGAGTCCTGATAGTATCAACAATGTAGAGCAGCTTCAGCAGATGGAAGATCTAATAAGGGAGTCCCTAAACCAGACACGTCTACACAAGGAAAATTTAAGAAGACATCAACTACTCTCACAGGACTTCACGGGCCAGTATCCGGGTGGTGGAATGTCCTTACCTTTGTTAATGGACGAAATGCAAGGCACTCAACCTCTGTTATGGCTTCCCAGCTATAGCACTCAACAGATCACTTTACCAAATGAGCCTAGCTTTCTGCAACCAGGTGATGTTGAATGCTCATTTCCAAGCTATCCTAGTTTCTTCAACCCTGGGAACAAAACTGAAGCTGGAATCTCTGGTCAAGTTGATAGCATGCCACAAGGCGATGGGGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGATCAATATCCATACCCTACATGTGACGGTTCCAGCTTCCAAGATGAAAAGAAACTGAAAATTGAGATGGAGATGAACTTGCATGCAACTTGTGTGGACACTCAACTGAATGGCAAGTTGGAGCTCTCTAGATCTCTATATGATGATGACCAGTATCCTTGGGCTGCTATACCAGGGCCTTGTAGCATTCCAATGTACCAAAGCAATGCATATCACCATCAGCCAAATTGA 1068 43.07 MGRVKLKIKKLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGKPALYEGERSNIEEVITKFAELTPQERAKRKMESLEVLKKTFKKLDHDVNINDFVGSSSQDFEELTNEVAVLRDQIGKAHKRLSCWRSPDSINNVEQLQQMEDLIRESLNQTRLHKENLRRHQLLSQDFTGQYPGGGMSLPLLMDEMQGTQPLLWLPSYSTQQITLPNEPSFLQPGDVECSFPSYPSFFNPGNKTEAGISGQVDSMPQGDGALNELSGTSCSTLQLGDQYPYPTCDGSSFQDEKKLKIEMEMNLHATCVDTQLNGKLELSRSLYDDDQYPWAAIPGPCSIPMYQSNAYHHQPN 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30724035 30727504 - CcPI632755_01g018050.1 Cco01g1805 170667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1805 355 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1805 355 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1805 355 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1805 355 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1805 355 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1805 355 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Cco01g1805 355 Gene3D - 14 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1805 355 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco01g1805 355 Coils Coil 114 134 - -
Cco01g1805 355 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1805 355 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1805 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1805 Cco-Chr1:30724035 Cco04g0488 Cco-Chr4:15779386 2.60E-15 dispersed
Cco01g1805 Cco-Chr1:30724035 Cco05g2687 Cco-Chr5:34847549 3.30E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g565 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00080 Csa01g00558 Chy12g01534 Cme12g01984 . . . . . . . . Sed01g2340 . . . . Car13g00970 . . . Bhi08g01149 Tan05g2432 Cmetu12g1892 . Hepe07g2502 . . Cla04g01191 . . Cco01g1805 Clacu04g1277 . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012582 0 5 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58657 PF00319 SRF-TF 1.20E-19 No_clan Cco TF