Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1813 ATGGGGAGGTGGGCCCAAAGGTATCTGGAAAAATCTGTACCAAAAACGTTGATTCTTTGCCGTCCGTCCCAATGGACTGAGCTACTCCCTTTCACCCAACTGATTCAACGTCAACGTAACGTTAACTTTAGACGAACGTTACCCAACCTAGGCTCCGAGTTTAGCTTCGGACTCCCTGATTTTCAAGAAGCTTTTGTTTTTGTCCAAGAATGGTCGCTGCAGGGAACTACTGCTCCAGGATCTTCTTTAGAATCTTCATCTTCTCAAAATTCAGAGCCGCCTGTTTGTGCTATTGCTGTTGAAGATGTGGATGAACATGATGGATCCGAAGAAGACCCACTTATACAGACAGTTGAATGTCGAATATGTCAGGAAGAGGACAGTATTAAGAATTTGGAGGTTCCTTGTGCTTGCAGTGGCAGCTTGAAGTATGCTCACAGGAAATGTGTCCAGCAATGGTGCAATGAGAAGGGAGATATAACTTGCGAAATCTGTCATCAGAATTATCAGCCTGGTTATACCTTGCCCGTACCACCCCCTCGCTCTGAAGATGCCACCATTGACGTGAGTGAAGGTTGGGCAGTCTCTGAAACTGCTTTAGATTTGCATGATCCACGACTTTTAGCTATGGCAGCAGCAGAACGCCACTTTCTTGAGGCAGAGTATGATGAATATGCAGATGCCAGTGCGAACGGAACGGCGTTTTGCCGATCTGCTGCTCTGATTTTGTTGGCTCTTTTACTGTTGAGGCATGCTCTATACCTTACAAATGGTGATGGAGAAGATGATGCATACACTTTCTTCTCGCTTTTATTGCTGCGAGCTGCCGGGTTTCTTCTTCCTTGCTACATAATGGCATGGGCCATCAGCATACTACAGCGTCGAAGACAAAGACAGGAAGCTGCAGCGCTTGCAGCAACTGAAGTTGCATTTATGCTGCAGGCAGCACAAAGTCAGAGCCTTCAGTTTACTATCGCTCCAGGGCCTGTGGTTACTCCTCATCAAGAACCACTCCAATAA 1020 46.47 MGRWAQRYLEKSVPKTLILCRPSQWTELLPFTQLIQRQRNVNFRRTLPNLGSEFSFGLPDFQEAFVFVQEWSLQGTTAPGSSLESSSSQNSEPPVCAIAVEDVDEHDGSEEDPLIQTVECRICQEEDSIKNLEVPCACSGSLKYAHRKCVQQWCNEKGDITCEICHQNYQPGYTLPVPPPRSEDATIDVSEGWAVSETALDLHDPRLLAMAAAERHFLEAEYDEYADASANGTAFCRSAALILLALLLLRHALYLTNGDGEDDAYTFFSLLLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATEVAFMLQAAQSQSLQFTIAPGPVVTPHQEPLQ 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30782309 30786072 + CcPI632755_01g018130.1 Cco01g1813 170675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1813 339 Pfam RING-variant domain 120 165 IPR011016 GO:0008270(InterPro)
Cco01g1813 339 CDD RING_CH-C4HC3_MARCH 120 166 - -
Cco01g1813 339 FunFam RING/FYVE/PHD zinc finger protein 108 176 - -
Cco01g1813 339 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 85 312 IPR033275 GO:0004842(PANTHER)|GO:0016020(PANTHER)|GO:0016567(PANTHER)
Cco01g1813 339 SMART ringv_2 119 166 IPR011016 GO:0008270(InterPro)
Cco01g1813 339 ProSiteProfiles Zinc finger RING-CH-type profile. 112 172 IPR011016 GO:0008270(InterPro)
Cco01g1813 339 Pfam Protein of unknown function (DUF3675) 171 289 IPR022143 -
Cco01g1813 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 171 IPR013083 -
Cco01g1813 339 SUPERFAMILY RING/U-box 117 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1813 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1813 Cco-Chr1:30782309 Cco11g0997 Cco-Chr11:17326159 1.30E-93 dispersed
Cco10g1128 Cco-Chr10:23675653 Cco01g1813 Cco-Chr1:30782309 1.70E-23 transposed
Cco01g1813 Cco-Chr1:30782309 Cco05g2699 Cco-Chr5:34907404 9.30E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g554 Blo04g00770 . . . . . . . Cmo13g01189 . . . . . . Cpe20g00017 . . . . . . . . . . . . . . . Cone2ag0845 Cone16ag0170 . . Lsi02g00075 Csa01g00552 Chy12g01538 Cme12g01990 . . . Bda14g00852 . Bpe15g00601 Bma03g00831 . . . . Cma13g01135 . Car13g00966 . . . Bhi08g01164 Tan05g2438 . Lac10g0079 Hepe07g2507 . . Cla04g01196 Cam04g1255 Cec01g1766 Cco01g1813 Clacu04g1285 Cmu04g1261 Cre01g1554 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000419 4 6 4 4 3 3 6 3 3 3 3 3 6 3 3 6 3 6 6 3 3 3 3 3 3 3 3 12 6 2 122