Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1830 ATGGAAGCTGGAAATGACCAACTTCAGTATCACCAAAACCATCGCTCAGCAACTTCTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATAATAATCCCCAACCTCCCCTTGACATCATCTCTAAGAAGCCCTCTCCCAAGAGAACTTCTACTAAGGACCGCCACACCAAAGTGGACGGCCGCGGTCGTCGCACCCGAATGCCTGCTCTCTGTGCTGCTAGAGTTTTCCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACCATTGAATGGCTTCTTCAACAGGCAGAGCCTGCCGTTATCGCCGCCACCGGGACCGGTACTATACCTGCAAACTTTAACTCTCTCAACACGTCGTTGAGAAGGTCGGCCACAAGCATTTCTTTGCCATCTCAACTAAGATCCTCATCTTACTACCACCCGGGAGTGATGGGGTTCAACTCTGAAGCAATGACTAATAATATGACGCAACCAAAAGAAGATCATCACTATCTACACCAATCCACCACGGGCCTAATCCCCACCACGATTCCGGCCAACTTTTGGATGCTTTCCGACGCCAACAACCAATTACTCGGCGGCGGAGGCGACTCTCTATGGAGGGTTCAGTCGGCCAACAACCAAGACGCCGCTTTATACAGATTAGGACAACCCTCCGGTGGTAATAATTTACGTTTATCCAATGATCTGGCTGCTCCATTGACGCTCCTCCCTGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGGTGGACGTGGAACCATGAATGATGACGGACACTTGAATATCTACGCCGCCCAAGATCCGCCGCATGGGGCGGCTCCCGACACCGGCGTCTCCTAA 852 51.76 MEAGNDQLQYHQNHRSATSFPLQLLEKKEYDNNPQPPLDIISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAMTNNMTQPKEDHHYLHQSTTGLIPTTIPANFWMLSDANNQLLGGGGDSLWRVQSANNQDAALYRLGQPSGGNNLRLSNDLAAPLTLLPGKPLSLGPTAGGGRGTMNDDGHLNIYAAQDPPHGAAPDTGVS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30897842 30899657 + CcPI632755_01g018300.1 Cco01g1830 170692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1830 283 MobiDBLite consensus disorder prediction 243 283 - -
Cco01g1830 283 MobiDBLite consensus disorder prediction 1 20 - -
Cco01g1830 283 Pfam TCP family transcription factor 50 153 IPR017887 -
Cco01g1830 283 ProSiteProfiles TCP domain profile. 52 106 IPR017887 -
Cco01g1830 283 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 165 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cco01g1830 283 MobiDBLite consensus disorder prediction 46 62 - -
Cco01g1830 283 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1830 Cco-Chr1:30897842 Cco11g1390 Cco-Chr11:26691479 4.50E-34 dispersed
Cco05g1567 Cco-Chr5:20047235 Cco01g1830 Cco-Chr1:30897842 1.60E-29 transposed
Cco01g1830 Cco-Chr1:30897842 Cco05g2708 Cco-Chr5:34968929 9.60E-45 wgd
Cco01g1830 Cco-Chr1:30897842 Cco06g1829 Cco-Chr6:28593417 3.70E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58661 PF03634 TCP 5.30E-36 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1830 - - - 0.0