Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1830 ATGGAAGCTGGAAATGACCAACTTCAGTATCACCAAAACCATCGCTCAGCAACTTCTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATAATAATCCCCAACCTCCCCTTGACATCATCTCTAAGAAGCCCTCTCCCAAGAGAACTTCTACTAAGGACCGCCACACCAAAGTGGACGGCCGCGGTCGTCGCACCCGAATGCCTGCTCTCTGTGCTGCTAGAGTTTTCCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACCATTGAATGGCTTCTTCAACAGGCAGAGCCTGCCGTTATCGCCGCCACCGGGACCGGTACTATACCTGCAAACTTTAACTCTCTCAACACGTCGTTGAGAAGGTCGGCCACAAGCATTTCTTTGCCATCTCAACTAAGATCCTCATCTTACTACCACCCGGGAGTGATGGGGTTCAACTCTGAAGCAATGACTAATAATATGACGCAACCAAAAGAAGATCATCACTATCTACACCAATCCACCACGGGCCTAATCCCCACCACGATTCCGGCCAACTTTTGGATGCTTTCCGACGCCAACAACCAATTACTCGGCGGCGGAGGCGACTCTCTATGGAGGGTTCAGTCGGCCAACAACCAAGACGCCGCTTTATACAGATTAGGACAACCCTCCGGTGGTAATAATTTACGTTTATCCAATGATCTGGCTGCTCCATTGACGCTCCTCCCTGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGGTGGACGTGGAACCATGAATGATGACGGACACTTGAATATCTACGCCGCCCAAGATCCGCCGCATGGGGCGGCTCCCGACACCGGCGTCTCCTAA 852 51.76 MEAGNDQLQYHQNHRSATSFPLQLLEKKEYDNNPQPPLDIISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAMTNNMTQPKEDHHYLHQSTTGLIPTTIPANFWMLSDANNQLLGGGGDSLWRVQSANNQDAALYRLGQPSGGNNLRLSNDLAAPLTLLPGKPLSLGPTAGGGRGTMNDDGHLNIYAAQDPPHGAAPDTGVS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30897842 30899657 + CcPI632755_01g018300.1 Cco01g1830 170692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1830 283 MobiDBLite consensus disorder prediction 243 283 - -
Cco01g1830 283 MobiDBLite consensus disorder prediction 1 20 - -
Cco01g1830 283 Pfam TCP family transcription factor 50 153 IPR017887 -
Cco01g1830 283 ProSiteProfiles TCP domain profile. 52 106 IPR017887 -
Cco01g1830 283 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 165 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cco01g1830 283 MobiDBLite consensus disorder prediction 46 62 - -
Cco01g1830 283 MobiDBLite consensus disorder prediction 1 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1830 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1830 Cco-Chr1:30897842 Cco11g1390 Cco-Chr11:26691479 4.50E-34 dispersed
Cco05g1567 Cco-Chr5:20047235 Cco01g1830 Cco-Chr1:30897842 1.60E-29 transposed
Cco01g1830 Cco-Chr1:30897842 Cco05g2708 Cco-Chr5:34968929 9.60E-45 wgd
Cco01g1830 Cco-Chr1:30897842 Cco06g1829 Cco-Chr6:28593417 3.70E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g537 Blo04g00768 . Bda06g00547 Bda15g00599 Bpe12g00551 . . Bma12g00998 Cmo13g01176 . Cma10g00186 . Car10g00176 Car11g00147 Sed08g0209 Cpe20g00029 . Bhi02g00330 Tan09g2130 Cmetu02g1507 . Hepe09g0125 . . Cla06g01596 Cam06g1770 Cec06g1822 Cco06g1829 Clacu06g1733 Cmu06g1677 Cre06g2493 . . . Cone19ag0075 Lsi02g00060 Csa01g00533 Chy12g01554 Cme12g02008 Blo13g00013 Blo15g00307 . Bda14g00846 Bpe07g00785 Bpe15g00605 . Bma08g00216 . Cmo10g00203 Cmo11g00159 Cma13g01122 . Car13g00957 . . Cpe18g00799 . . . . . . . Cla04g01209 Cam04g1275 Cec01g1783 Cco01g1830 Clacu04g1303 Cmu04g1279 Cre01g1570 Lsi06g01472 Csa01g00228 Chy02g02504 Cme02g01890
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g0861 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.2e-68 255.0
Cco02g1531 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cco06g0018 . 59 343 TCP Transcription Factor Family AT2G45680 53.8 2.5e-66 249.6
Cco05g2708 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 8.5e-41 165.2
Cco01g1830 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cco11g1390 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cco11g1390 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cco05g1567 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cco02g1531 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.6e-64 241.5
Cco01g0861 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.6e-63 237.3
Cco11g1390 . 147 388 TCP Transcription Factor Family AT1G35560 50.4 1.7e-43 173.7
Cco07g1729 . 43 183 TCP Transcription Factor Family AT3G02150 58.8 5.8e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58661 PF03634 TCP 5.30E-36 No_clan Cco TF