Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1844 ATGACGGTCACCACCACCCAACAACTCTTTGTTGTGTCTCTCATTTCTCTCACTCTCCTCACCACTGCAGTTTCGTATTCAGAAGCCCATGGCTTGAACATGAACGCCATTGACAGATGCTGGAGATCCAACCCATACTGGAGAAGAAACAGGCAACAACTCGCCGTTTGCTCGGTTGGTTTCGCTGGAAAAATGACCAACAACATGGGAAGAAATCTCATACGCTACCAAGTCACGGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACGCTCAGATACGGCGCCACAATGATCAAACCCAAAGTCTGGATCACATTCCCAAAAGATATGCATATTATGCTCAAGAAGCCGCTTCTCATTAGCAGCTTCACCGCCATCGACGGACGAGGCGCCACCGTCCACATCACCGGGAACGCGTGTTTGATGGTGTTCAGAGCCACCAACATCATCATCCACGGCCTTATCATCCACCACTGCAGGGCTCAGGCGGCGGGTCGAGTCATGGGCCCAAATTCCAAGATCATCTCACTTGGACACGTGGACGGTGATGCCATTCGTTTAGTAACTGCCTCCAAAGTGTGGATTGACCACAACACGCTGTACCGTTGCGAGGATGGGTTGCTTGACGTCACGCGTGGGTCCACTGACATCACCATTTCCAACAATTGGTTTCGAGATCAAGACAAGGTTATTCTTCTTGGCCACGATGACGGTTATGTTCGAGATCGGAACATGAGAGTCACCGTAGTCTACAACCATTTTGGACCCAATTGCAACCAAAGAATGCCAAGGATCCGATATGGGTATGCACACGTGGCGAACAATTTATATCAAGGTTGGACGCAATACGCAATTGGAGGGAGCATGAATCCAAGCGTCAAGAGTGAAGCCAACCTTTTCATTGCATCAAAGTCAAAACAAATTATATGGAGCACAGGGAAAGTAGAGGAGACGAAATGGAAGTTTCATTCAGTAAGAGACGTATTTGAAAACGGAGCTTTATTCGCGCAAATCGGTAAGGGGAGAGGAGGTGTAAAGCCAAATTACAACGCCCAACAACGTTTTCCGGTTGCAGATGCCAAGTGGCTTAGATCATTAACAGGCTCCTCCGGGGCATTGCGTTGCTCATCAAACTCAAAATGTTGA 1152 48.78 MTVTTTQQLFVVSLISLTLLTTAVSYSEAHGLNMNAIDRCWRSNPYWRRNRQQLAVCSVGFAGKMTNNMGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKPKVWITFPKDMHIMLKKPLLISSFTAIDGRGATVHITGNACLMVFRATNIIIHGLIIHHCRAQAAGRVMGPNSKIISLGHVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMRVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGKVEETKWKFHSVRDVFENGALFAQIGKGRGGVKPNYNAQQRFPVADAKWLRSLTGSSGALRCSSNSKC 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31004490 31005887 - CcPI632755_01g018440.1 Cco01g1844 170706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1844 383 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
Cco01g1844 383 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cco01g1844 383 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Cco01g1844 383 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Cco01g1844 383 PRINTS Pollen allergen Amb family signature 263 282 IPR018082 -
Cco01g1844 383 PRINTS Pollen allergen Amb family signature 183 204 IPR018082 -
Cco01g1844 383 SMART amb_all 111 308 IPR002022 -
Cco01g1844 383 Pfam Pectate lyase 124 302 IPR002022 -
Cco01g1844 383 Gene3D - 34 376 IPR012334 -
Cco01g1844 383 SUPERFAMILY Pectin lyase-like 34 373 IPR011050 -
Cco01g1844 383 PANTHER PECTATE LYASE 18-RELATED 32 379 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1844 Cco-Chr1:31004490 Cco03g0446 Cco-Chr3:4778487 8.60E-89 dispersed
Cco01g1844 Cco-Chr1:31004490 Cco05g2722 Cco-Chr5:35129545 2.10E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1844 K01728 - csv:101217103 678.707