Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1846 ATGGGGAAGAAGAAGAGGACCGATGCTGGTGGTGAAAGTTCCGAGTCTCAAGATGGTGGTGGTCGTGGCTCTCAACGATCAGCTGAAAGGAGAGACGGCCCACAGCAACATGGTGGGAGTGGGTACCAGGGTGGTAGAGGTTGGGGTTCTCAAGGGGGACGTGGAGGTCAAGGCAGTGGTGGTCGTGGCCGAGGAACGTCACAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGCAGGGGTAGAGGTGGAGGTGGGCCATATCAGCATGGAGGACGCAGTAACTATGGTGGTGGTAATCGTGGAGGCATGGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGACCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCTCAGTGTATCAAGGAGGGATGACTCAGCCAGTCTCCTCTGTGGCGAGTTCTTCCTCCCACCCATCTTCTGATACTTCATCAATTGATCAACAATTTCAACAGATTTCCATCCAACAGGAATCTGCTCAAAGCCAAGCAATTCAACCTGCACCGTCTAGTAAATCCATGAGATTCCCTCTGAGACCAGGAAAGGGTAGCTCTGGCATAAGGTGTATCGTTAAAGCTAACCACTTCTTTGCCGAGTTACCAGACAAAGATCTTCATCAGTATGATGTTACCATTACCCCAGAAGTCACTTCGCGGGTCTACAATCGAGCCGTAATGGAACAACTAGTGAAATTATATAGGGTCTCGCACCTTGGGGATCGGCTTCCTGCTTATGATGGAAGAAAAAGTTTATATACGGCTGGTCCCCTCCCTTTCATATCTAATGAGTTTAGAATAACTCTTTTTGATGAAGAAGATGGATCCGGAGGACAAAGACGGGAGAAAGAATTTAAAGTTGTGATCAAGTTTGCTGCTCGTGCTGATCTGCACCATCTTGGACTCTTTTTGCAAGGCAGACAGGCTGATGCCCCTCAAGAAGCCCTTCAAGTTCTGGATATTGTATTACGCGAACTGCCTACTTCAAGGTATTGTCCAGTGGCCCGATCATTTTACTCTCCAGACCTTGGCAGACGTCAGACACTGGGTGAAGGGTTGGAAAGTTGGCGTGGCTTTTATCAGAGTATCCGCCCTACTCAAATGGGGCTCTCCCTTAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTCATTGATTTTGTGACTCAACTTCTTAATCGTGATGTGTCTTCCAGACCATTATCTGATGCTGATCGTGTGAAGATAAAAAAGGCTCTCCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGTTTGACATCACAAGCAACAAGGGAGCTAACTTTCCCAGTTGATGAAAGAGGTACTATGAAGTCGGTGGTTGAGTACTTCTACGAAACATATGGGTTTGTTATCCAACATACCCAGTGGCCTTGTCTTCAAGTAGGGAATCAGCAGAGACCTAACTATCTACCCATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAAATAACTGCTCTGCTCAAGGTTACATGCCAACGGCCAAAAGATAGAGAAGAAGATATTATGCAGACGGTACGTCATAATGCATATCAAAATGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAAAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCAGCACCATGGCTAAAATATCATGACACCGGCAGAGAAAAAGATTGTTTGCCACAAGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTTAACAACTGGATGTGCATTAATTTCTCTCGCTATGTGCAAGACAGTGTTACTCGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTATTGCCAGATAACAACGGATCTCTTTATGGTGATTTAAAACGTATCTGTGAAACAGATCTCGGCCTTGTTTCCCAGTGCTGTTTGACTAAACATGTCTTCAAAATGAGCAAACAGTACTTGGCCAATGTGGCCTTGAAAATAAACGTTAAGGTTGGGGGAAGGAATACAGTACTCGTTGATGCGTTATCTAGGCGTATACCTTTGGTTAGTGACCGGCCTACCATTATATTTGGTGCTGATGTAACTCATCCTCACCCAGGAGAAGACTCAAGTCCATCCATTGCAGCTGTTGTGGCTTCTCAAGATTGGCCAGAAGTTACAAAATATGCTGGTTTGGTTAGTGCTCAGGCCCACAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTTAGAGGGACAGTAACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGAATTATATTTTACAGGGATGGGGTTAGCGAAGGACAGTTCTACCAAGTTTTGTTGCATGAGCTGGATGCGATTAGAAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCACCCGTGACATTCGTTGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAACAACCATTCTGATCGCCATGCAGTCGACAAGAGTGGGAACATATTACCTGGTACGGTTGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTTTACCTGTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTCCTGTGGGATGAGAACAAGTTCACAGCTGATGGATTGCAGACTCTAACGAATAATCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCTATTGTGCCCCCAGCGTACTACGCTCATCTTGCTGCATTTCGAGCTCGTTTTTATATGGAACCTGAAACCTCCGATAGTGGGTCAATTAGCAGTGATGCTGCTGCTGGACGTGGTGGCGTTGGTGCTCGCAGTACACGGGCACCGGGGTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTTAAGAGGATCACAAGGCAAAAGCAAGGCAATCATCACTTTATCATCAAGTTGAAAACTGTTTCAGAAGACAATAAGAAAGAAGGTTGTGTAATTATAGCCATGGAAGCAGCCAATTTGATGAGATTAGACACACCAATGTCTGACAGTCTAAACAATGCATTGAGGAGATCCCATAACTCAATGAAGAAATGCTTTGCCAGGTTTGTTGAGAATGGGAAGAGGTTGATGAAATGCCAGGATTTGATGAAAGATGTGGAGATAACGATTGAAGATAAGCGTGAGAGAAGCCATGTTTTGGAAGGCTTTCTTGGCTACATTCTAAGTAACACTCAGGAGGCTGCTGTTGTCCCTCCGAACATCGCTCTAGCCGTTAGGCCGAGTCCCGGTTTCTGGGAGTTCGTTAAGGTGAATGCTACAAGTTTGGAAGTAGGAGACCTTACTGTTTCAGAGTACTTGAAATTTAAGGAAGCCATCTTTGATGAGAATTGGGCAAATGATGAAAATGCTCTTGAGATAGATTTTGGAGCCATTGAATTCAGTGCCCCTCGCTTGAGCCTTCCTTCATCGATTGGAAACGGAGTCAACTTGATCTCAAAATTCATCAGTTCAAGGTTTGGTGAGGATAAACAGAATGTCAAGGAACTTGTTGATTATCTGCTGGCTCTTCACCATCGAGGACAGAGTCTTATGATAAATAAGAAACTTAATACCGTTTCCAAGCTTCAATCCGCATTGTTTGCAGCTCAAGTATATCTATCTTCACTGCCAAAAGACACGCCATATGAAGAATTCAAGCACAAGATGAAAGGATGGGGATTTGAGAAAGGATGGGGAAGTACTTCAGAGAGGGCCAGAGAAACAATGTTAATCCTTTCTGAGGTCCTCCAGGCACCAGATCCAGCAAAATTGGAGTTACTGTTTAGCAAGCTTCCAACCACATTGAATATTGTAATCTTTTCACCTCACGGCTATTTCGGCCAGGCAGGCGTCCTCGGTTTGCCCGACACCGGCGGTCAGATTGTCTACATTCTGGATCAAGTGAGAGCTTTAGAAGAAGAGTTGCTGCACAGAATTGAACTGCAAGGCCTTCAAGCAAAGCCTCAGATTCTTGTGGTGACAAGATTAATACCCGATGCACGAGGGACGAAGTGCAATGTGGAGTTGGAGCCTATTGAAAACACAAAACATTCTCACATCCTCAGGGTGCCATTCTTCACACAAAATGGAGTTCTTCACCAATGGGTTTCACGCTTCGATGTCTACCCATACTTGGAGAGATTTGCCAAGGATGCCACTAGCAAGATCCTTGAAGTCATGGATTGCAAACCAGACCTCGTCATTGGCAACTACACTGATGGAAACTTGGTTGCTTCTTTGATGGCTAAGAAACTTGGAATTACACAGGGAACTATAGCACACGCTTTAGAGAAAACAAAATATGAGGATTCAGATGCTAAGTGGAAGGAACTTGATCCAAAGTATCATTTTTCATGTCAATTCACAGCTGATTTGATCTCAATGAATGCAACTGATTTCATTATAACAAGTACATATCAAGAAATTTCAGGAAGCAAAACCAGGCCAGGACAATATGAAAGCCATGAGGCCTTTACTATGCCTGGACTTTACAGGGTAGTCTCAGGTATTAATGTGTTTGACCCCAAATTCAACATTGCTGCTCCTGGGGCTGATCAATCTGTCTATTTTCCTTTCACTGAGAAATCAAAGCGACTGACTAATCTTCATCCCGATATCGAGGAACTACTTTATAGCAGAGAAAACAATGATGAACACATAGGTTACCTTGCAGATAAGAAGAAGCCAATTATTTTCTCAATGGCAAGGCTTGATACAGTGAAAAACATTACTGGGTTGACTGAATGGTATGGTAAAAACAGGAAGCTGAGAAGTTTAGTAAACCTTGTGGTGGTAGCTGGATTCTTTGATCCATCAAAATCAAAGGACAGGGAAGAAATTGCTGAGATAAAAAAGATGCATTCCCTGATAGAAAAATATAAACTCAGGGGGCAAATCAGATGGATAGCAGCTCAAACCGATCGCTACCGCAATGGAGAGCTATACCGGTGCATTGCTGATACAAAAGGAGCTTTTGTGCAGCCTGCACTTTATGAGGGTTTTGGCCTAACAGTCATTGAGGCAATGAACTGTGGACTGCCTACTTTTGCAACAAACCAAGGAGGCCCAGCCGAGATAATTGTCGACGGAGTTTCCGGCTTCCACATCGATCCGAACAATGGAGACGAATCAAGCAAAAAGATTGTTGCTTTCTTTGAGAAATGCAAGTCAGATGGTGGGTATTGGAACAAGATGTCAGAAGCTGGTCTTCAGCGAATATATGAATGCTACACTTGGAACATATATGCAAAGAAGGCTCTGAATATGGGATCAATTTATGGATTTTGGAGGCAGTTAACCAAGGACCAAAAACAAGCCAAGATCAGATACATTGAAATGCTTTACTCTCTCTTGCTTAGGAAATTGGTGAAGAACATTTCAATCCCTACTGAAGAATCCTTGCCAGCTCCAACCACCACAACTCCACCACAGCAGCCGACGCCGGAGCTCCGATCCCGGAGACCAACTGCCACTCAGCCGGAGCCAAGACCAAGGAGTGAAGATGGGGGTTCAGTGGAGCTTGGTCAGAGTGGGAATGGGCTATCACACAGCATAAAAAAGATGTGCTTTTTGGCTGGCTCTCTCTTGGTTGCTTACTACATTCTAAAGAGGATTTCTGGAGTAAATCAAGCATATGATGATTTACCATTATAA 5946 44.47 MGKKKRTDAGGESSESQDGGGRGSQRSAERRDGPQQHGGSGYQGGRGWGSQGGRGGQGSGGRGRGTSQHQHYGGPPDYQGRGRGGGGPYQHGGRSNYGGGNRGGMGGGGIGGGPSSGGPSRPPVPELHQATSVYQGGMTQPVSSVASSSSHPSSDTSSIDQQFQQISIQQESAQSQAIQPAPSSKSMRFPLRPGKGSSGIRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREKEFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVARSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMQTVRHNAYQNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSDAAAGRGGVGARSTRAPGLNAAVRPLPALKENVKRITRQKQGNHHFIIKLKTVSEDNKKEGCVIIAMEAANLMRLDTPMSDSLNNALRRSHNSMKKCFARFVENGKRLMKCQDLMKDVEITIEDKRERSHVLEGFLGYILSNTQEAAVVPPNIALAVRPSPGFWEFVKVNATSLEVGDLTVSEYLKFKEAIFDENWANDENALEIDFGAIEFSAPRLSLPSSIGNGVNLISKFISSRFGEDKQNVKELVDYLLALHHRGQSLMINKKLNTVSKLQSALFAAQVYLSSLPKDTPYEEFKHKMKGWGFEKGWGSTSERARETMLILSEVLQAPDPAKLELLFSKLPTTLNIVIFSPHGYFGQAGVLGLPDTGGQIVYILDQVRALEEELLHRIELQGLQAKPQILVVTRLIPDARGTKCNVELEPIENTKHSHILRVPFFTQNGVLHQWVSRFDVYPYLERFAKDATSKILEVMDCKPDLVIGNYTDGNLVASLMAKKLGITQGTIAHALEKTKYEDSDAKWKELDPKYHFSCQFTADLISMNATDFIITSTYQEISGSKTRPGQYESHEAFTMPGLYRVVSGINVFDPKFNIAAPGADQSVYFPFTEKSKRLTNLHPDIEELLYSRENNDEHIGYLADKKKPIIFSMARLDTVKNITGLTEWYGKNRKLRSLVNLVVVAGFFDPSKSKDREEIAEIKKMHSLIEKYKLRGQIRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEGFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPNNGDESSKKIVAFFEKCKSDGGYWNKMSEAGLQRIYECYTWNIYAKKALNMGSIYGFWRQLTKDQKQAKIRYIEMLYSLLLRKLVKNISIPTEESLPAPTTTTPPQQPTPELRSRRPTATQPEPRPRSEDGGSVELGQSGNGLSHSIKKMCFLAGSLLVAYYILKRISGVNQAYDDLPL 1981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31015132 31027641 + CcPI632755_01g018460.1 Cco01g1846 170708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1846 1981 PANTHER - 1092 1895 IPR012820 GO:0005985(InterPro)|GO:0016157(InterPro)|GO:0016157(PANTHER)
Cco01g1846 1981 MobiDBLite consensus disorder prediction 1 127 - -
Cco01g1846 1981 Pfam Piwi domain 688 1007 IPR003165 GO:0003676(InterPro)
Cco01g1846 1981 ProSiteProfiles Piwi domain profile. 687 1008 IPR003165 GO:0003676(InterPro)
Cco01g1846 1981 MobiDBLite consensus disorder prediction 1013 1035 - -
Cco01g1846 1981 FunFam Sucrose synthase 1235 1364 - -
Cco01g1846 1981 Pfam PAZ domain 400 527 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco01g1846 1981 Gene3D - 1097 1234 - -
Cco01g1846 1981 Gene3D - 575 750 - -
Cco01g1846 1981 Gene3D Glycogen Phosphorylase B; 1616 1843 - -
Cco01g1846 1981 SUPERFAMILY PAZ domain 204 553 IPR036085 GO:0005515(InterPro)
Cco01g1846 1981 Pfam Glycosyl transferases group 1 1653 1817 IPR001296 GO:0016757(InterPro)
Cco01g1846 1981 Gene3D Glycogen Phosphorylase B; 1369 1886 - -
Cco01g1846 1981 Pfam Argonaute linker 2 domain 537 583 IPR032472 -
Cco01g1846 1981 MobiDBLite consensus disorder prediction 139 190 - -
Cco01g1846 1981 Pfam Glycine-rich region of argonaut 73 183 IPR024357 -
Cco01g1846 1981 Pfam Sucrose synthase 1098 1642 IPR000368 GO:0005985(InterPro)|GO:0016157(InterPro)
Cco01g1846 1981 Pfam Argonaute linker 1 domain 346 395 IPR014811 -
Cco01g1846 1981 ProSiteProfiles PAZ domain profile. 398 511 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco01g1846 1981 SMART DUF1785_2 344 396 IPR014811 -
Cco01g1846 1981 MobiDBLite consensus disorder prediction 1896 1941 - -
Cco01g1846 1981 FunFam protein argonaute 10-like 756 1057 - -
Cco01g1846 1981 Pfam N-terminal domain of argonaute 202 335 IPR032474 -
Cco01g1846 1981 Pfam Mid domain of argonaute 594 669 IPR032473 -
Cco01g1846 1981 NCBIfam sucrose synthase 1111 1890 IPR012820 GO:0005985(InterPro)|GO:0016157(InterPro)
Cco01g1846 1981 FunFam Sucrose synthase 1616 1843 - -
Cco01g1846 1981 FunFam Sucrose synthase 1097 1234 - -
Cco01g1846 1981 Gene3D paz domain 390 515 - -
Cco01g1846 1981 SUPERFAMILY Ribonuclease H-like 682 1008 IPR012337 -
Cco01g1846 1981 CDD PAZ_argonaute_like 396 510 - -
Cco01g1846 1981 CDD Piwi_ago-like 555 1007 IPR045246 -
Cco01g1846 1981 MobiDBLite consensus disorder prediction 139 183 - -
Cco01g1846 1981 SMART Piwi_a_2 687 1008 IPR003165 GO:0003676(InterPro)
Cco01g1846 1981 FunFam Protein argonaute-2 390 516 - -
Cco01g1846 1981 SMART PAZ_2_a_3 401 533 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco01g1846 1981 Gene3D - 1235 1364 - -
Cco01g1846 1981 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1384 1852 - -
Cco01g1846 1981 Gene3D - 756 1056 IPR036397 GO:0003676(InterPro)
Cco01g1846 1981 FunFam Argonaute 10 575 750 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0883 Cco-Chr1:9760676 Cco01g1846 Cco-Chr1:31015132 0.00E+00 dispersed
Cco01g1552 Cco-Chr1:28226936 Cco01g1846 Cco-Chr1:31015132 7.30E-302 dispersed
Cco01g1846 Cco-Chr1:31015132 Cco05g0563 Cco-Chr5:4557981 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1846 K11593 - csv:101212130 1823.14