Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1853 ATGGCTCAGACGGCAAATCGATCGAAATTGCGGTGGGGAGAGCTAGATGACGACGACGGCGATCTGGATTTTCTTCTACCGCCCAAGAAAATTATCGGTCCAGACGAGAACGGCTTGAAGAAAATTATTGAATATCAGTTTAACGAAGATGGTAATAAGGTCAAGATCACAACCACCACGCGTATTCGCAAGCTCGCCCATGCTCGCCTCAGTAAACACGCCGTTGAGCGCCGATCTTGGGCAAAGTTCGGCGACGCTGTGCACGAAGACGTCGGCAGCCGCCTCACCATGGTCTCCACTGAGGAGATCCTCCTGGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAAGAGCCAAAGGTTGCAGGAGACCCTCTAGCTCAACTTGGAAAAGGCGGTGCTGTTCTTATGGTGTGTCGTACTTGTGGCAAAAAGGGCGATCATTGGACCTCGAGATGCCCTTACAAAGACTTGGCACCACAGGGTGAGGGATTGGATAAGACTTCAGCACCAGAGGCTACAGCTGCTGCACCCGGTGCAACAAAGGGAACATATGTTCCTCCAGGTATGAGAGCAGGAGCAGACAGGACTGGAACTGATATGAGACGTAGGAACGATGAAAACTCCGTTCGTGTCACCAACCTCTCGGAGGACACAAGAGAGCCTGACCTTCTCGAGCTTTTCCGGCCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCAGTTGATCAGAAGACGGGTATGAGCAGAGGATTTGGTTTTGTGAACTTTGTGAACCGTGAGGATGCTCAAAGAGCAATCAACAAACTGAATGGATATGGTTATGATAATCTCATTCTTAGAGTTGAGTGGGCTACTCCAAGGGCTACTTAA 867 50.4 MAQTANRSKLRWGELDDDDGDLDFLLPPKKIIGPDENGLKKIIEYQFNEDGNKVKITTTTRIRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQGEGLDKTSAPEATAAAPGATKGTYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31068710 31070191 + CcPI632755_01g018530.1 Cco01g1853 170715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1853 288 MobiDBLite consensus disorder prediction 163 206 - -
Cco01g1853 288 CDD eIF3G 37 156 IPR024675 -
Cco01g1853 288 Gene3D - 164 288 IPR012677 -
Cco01g1853 288 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
Cco01g1853 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cco01g1853 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 283 - -
Cco01g1853 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676(InterPro)
Cco01g1853 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Cco01g1853 288 FunFam Eukaryotic translation initiation factor 3 subunit G 172 288 - -
Cco01g1853 288 SMART rrm1_1 208 281 IPR000504 GO:0003723(InterPro)
Cco01g1853 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723(InterPro)
Cco01g1853 288 Pfam RNA recognition motif 209 275 IPR000504 GO:0003723(InterPro)
Cco01g1853 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1853 Cco-Chr1:31068710 Cco05g1385 Cco-Chr5:15079541 6.10E-156 dispersed
Cco01g1853 Cco-Chr1:31068710 Cco09g0112 Cco-Chr9:998806 2.00E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1853 K03248 - csv:101212619 541.962