Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1858 ATGTTCAAAGTCTTCGCAGTCGCTGCGTTGCCTTGGTCAGCTCTTTTACTATTACAATCTCCTCTTCCCCTCGCAATGCAGTTCCACACTTCTCCAACTGTTCACACCTTCACTTTCTCCTCCTCTCTGCTGCCATGGAATTCGCTTTGGAATCCAGTTCTAAGTAGGCGTCTGCCTCTCTCTCACTCTCAGTGTTCATTTCCGAACTCTGCGCTGGATTTACTTTTTGTGAAGGTCCTGCACGCTGATCGTCATTCCAACTTCAGTAATTCAGTTATTCAAGAAAAAATTCAGTCTAGATACTTAGGCATGGCTGCTTTTGAAAAAGACGATATACCGATGCTATCAAACACCGATCCACCAATGTTTGATGAGCAAGTGGGTTCTTATTTTCCTTCATATGCATCCTTGGGCCGGAGTTCATCACTATCAATTCCAGCAACTTCTTCTGGCATGTATGGTAGTGAAGCAATTCTTGTTGGTCATACTGGTCCCCTTCGAATTGAAAGAAGTTCATTCATGGTGAGTGGTTCAAAATATACCGGCAGTAAGCCTGAAAAACTTTCACAGTCAAAGCCAGGAGTGACTGAAAGCAAAACGGCAGAGCTGTTGGCAGAAAAAATCCCTTCCTTCAAGGCGACAGATGAGTCTGATTGGTCCATTCATAACTATGCTGGTAGAAATGAACACTTAATAAGGTCTGGCCAGCTGGGATTGTGCAATGATCCTTTCTGTATTACTTGCCCAACATATAATTTCAAAGCATCACAACAGAAAAGCTCAAGAATTTCAGGCATATTTGACGCCAAGTTTCATAACGATCTCTATGGAGGAGGGAAAGGTTGGGCGGGAAGCTTTCAGTCATTCTGGTGCTTCTTGCTTCCATATATTCCAGGAGTAATGAATCCTCATGCAAAAGTTGTTCAGCAGTGGAACAAATTTTTTGTCATTTCTTGCTTAGTGGCAATCTTCTTGGACCCACTATTTTTCTTCTTGCTGTCTGTCCAATATAAGAATAAGTGCATCGTTATTGATTGGTCTTTGACCACGGCATTGGTGGTTTTCCGGAGCCTAACTGACTTTATCTATGTCCTACACATGCTTCTTCAGTTTAGGTTGGCCTACGTGGCACCAGAATCCAGAGTTGTTGGTGCTGGCGAATTGGTTGACCATCCGAAGAAAATTGCTATGAATTACCTTAAAGGAAATTTTTTTGTAGATTTGCTTGTTGTTTTGCCGCTGCCTCAGATTATAGTTTTTCTAATCCTGCCAAAGTCTTTGGGGTCATCTGGAGCAAATTATGCCAAAAATCTATTACGCACTGCAGTTACTGTGCAATATATTCCCAGACTGTATAGATTTCTACCTCTTCTTGCTGGCCAGTCTCCAAGTGGCTTTGTATTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTCTGACCTTTATGTTGGCTGGTCATGTTGTTGGGTCTTTCTGGTATCTCCTTGGGCTTCAGGGGGTGAATCGATGTTTTCGAGAGGCCTGCACTAACACTGGAAATGAGAGCTGCTTGGAATATATAGATTGTGGGCATGGGAATGAAGCTGGGAGTCAGATTCAGGATCCACAGCGGGATTCATGGAAAAATAATGAGAATGCTACGGCATGTTTTGCCAAAGAAGGTTTCAATTATGGAATCTATCTTCAGGCTGTAAACCTTACTACAGAAAATAATATAATCACGAGATATACTTACTCCTTATTTTGGGGATTCCAGCAAATCAGTACTCTGGCCGGGAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTTACTATGGCTATTATTGGGCTTGGTCTATTGCTGTTTGCTCTTCTCATCGGGAATATGCAGAACTTTCTCCAGGCTCTTGGAAGAAGGAGGTTAGAAATGTCACTAAGACGTCGTGATGTTGAGCAATGGATGGAGCATCGTCGCTTACCAGAGAATTTAAGAAGGCAAGTACGACAGGCTGAAAGATACAACTGGGCTTCTACAAGAGGCGTAAATGAAGAGAGGATTTTCGAAAATTTGCCTGAGGACCTACAAAGAAACATAAGACGACATCTCTTTAGATTTGTTAACAAGGTTCGCATTTTTGCACTGATGGACTATGAGCCTATTTTAGACGCAATACGTGAGAGACTGCGGCAGAAGACATACATAGAAGGAAGTGAAGTTTTTTCTGCTGGAGATATAATTGAGAAGATGGTTTTCATCGTACGTGGGAAAATGGAGAGCCGTGTAGATGGAAATGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGCGAGGAACTTCTAGCATGGTGTCTTGAGCATTCCTCCATAAACAAAGATATGAAGCGGCATCAAGTTCCAGCACCGAGATTGGTCAGCAATCGGACAGTAAAATGCTTAAGTAATGTTGAAGCATTTTCTCTCCGGGTTGCAGACCTTGAAGAAGTGACTAGTATGTTTTCTAGATTCTTGCGAAATCCACGTGTTCAAGGAGCCATAAGGTACGAATCTCCCTACTGGAGGTACCTAGCAGCAACGCGCATTCAAGTAGCTTGGAGATACAGGAAAAGACGTCTATCTCGAGTTCAAACATCTCAATCTAACTAA 2634 42.52 MFKVFAVAALPWSALLLLQSPLPLAMQFHTSPTVHTFTFSSSLLPWNSLWNPVLSRRLPLSHSQCSFPNSALDLLFVKVLHADRHSNFSNSVIQEKIQSRYLGMAAFEKDDIPMLSNTDPPMFDEQVGSYFPSYASLGRSSSLSIPATSSGMYGSEAILVGHTGPLRIERSSFMVSGSKYTGSKPEKLSQSKPGVTESKTAELLAEKIPSFKATDESDWSIHNYAGRNEHLIRSGQLGLCNDPFCITCPTYNFKASQQKSSRISGIFDAKFHNDLYGGGKGWAGSFQSFWCFLLPYIPGVMNPHAKVVQQWNKFFVISCLVAIFLDPLFFFLLSVQYKNKCIVIDWSLTTALVVFRSLTDFIYVLHMLLQFRLAYVAPESRVVGAGELVDHPKKIAMNYLKGNFFVDLLVVLPLPQIIVFLILPKSLGSSGANYAKNLLRTAVTVQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHVVGSFWYLLGLQGVNRCFREACTNTGNESCLEYIDCGHGNEAGSQIQDPQRDSWKNNENATACFAKEGFNYGIYLQAVNLTTENNIITRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMEHRRLPENLRRQVRQAERYNWASTRGVNEERIFENLPEDLQRNIRRHLFRFVNKVRIFALMDYEPILDAIRERLRQKTYIEGSEVFSAGDIIEKMVFIVRGKMESRVDGNGIVVPLSEGDVCGEELLAWCLEHSSINKDMKRHQVPAPRLVSNRTVKCLSNVEAFSLRVADLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLAATRIQVAWRYRKRRLSRVQTSQSN 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31102437 31121269 + CcPI632755_01g018580.1 Cco01g1858 170720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1858 877 SUPERFAMILY Voltage-gated potassium channels 306 630 - -
Cco01g1858 877 CDD CAP_ED 707 825 IPR000595 -
Cco01g1858 877 ProSiteProfiles cAMP/cGMP binding motif profile. 720 777 IPR000595 -
Cco01g1858 877 Gene3D Jelly Rolls 705 831 IPR014710 -
Cco01g1858 877 Pfam Ion transport protein 313 633 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g1858 877 SUPERFAMILY cAMP-binding domain-like 635 833 IPR018490 -
Cco01g1858 877 Gene3D - 305 632 - -
Cco01g1858 877 Gene3D Helix hairpin bin 633 699 - -
Cco01g1858 877 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 297 870 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1858 Cco-Chr1:31102437 Cco06g1484 Cco-Chr6:25346448 2.50E-115 dispersed
Cco01g1858 Cco-Chr1:31102437 Cco01g0051 Cco-Chr1:383331 2.50E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1858 K05391 - csv:101215903 1422.53