Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1859 ATGGACTTTGGTGGTGGCTCTGGTTGGGACAACGATTCCTCCTCCGACCCTCAACGCAGGAAGAAACGCTACCATCGTCACAATGCCAACCAGATTCAGAGGCTCGAGGCAATGTTTAAAGAATGCCCCCACCCGGATGAGAAGCAGAGGTTACAGTTAAGTAGAGAGTTGGGATTGGCTCCTCGCCAAATCAAATTTTGGTTCCAGAATCGGAGGACCCAGATGAAGGCACAACACGAAAGGGCAGATAATAGTGCACTTCGGGCGGAGAACGACAAGATTCGATGCGAGAACATAGCCATCAGAGAGGCACTCAAAAATGTCATTTGTCCCTCCTGCGGTGGCCCTCCCCTTCAGGACCCTTACTTCGACGAGCACAAACTTCGAATCGAAAACTCCCATTTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCAGCCAAGTACATTGGGAGGCCAATCTCTCAACTTCCACCCATTCAACCTTCTCATTTTTCCTCCTTAGAGCTGTCCATGGGTAGTTTTCCCTCCCAAGAAATGGGATGCCCTTCTCTTGATCTTGATTTGCTTCCTGCAAGTTCTACAAGTGTTCCCAGTTTGCCATACCTGCACCCAATTCACCTCTCCTCTGTGGATAAGTCCCTCATGACTGAAATTGCCGCAAATGCCATGACAGAGCTACTCAGGCTTTCTCAAACTAATGAGCCATTTTGGATGAAATCACCAACTGATGGTCGTGACCTTCTTGACCTTGAAACCTATGGACATGCTTTTCCAAGACCCAACACTCCCTTGCAGAATCTCCATTTTCGAACCGAAGCATCTAGAGATTCAGGCGTTGTGATCATGAGTAGTGCAACATTGGTTGACATTTTTATGGACTCGAACAAATGGACAGAGTTATTTCCCACAATTGTCTCCATTGCAAGAACAATTGAAGTTATATCGTCCGGAATGTTGGGAAGTCAGAATGGCTCCTTGCAACTGATGTACCAAGAATTGCAGCTACTCTCCCCATTGGTTCCAACTCGTCATTTTTACGTCCTCCGATATTGCCAACAAATTGAGCAGGGTGTGTGGGCTGTGGTTGATGTTTCCTACAGTATCCCCAGAGAAAACCAAATAGTTTCTCATTCTCAATGTCACCGCTTTCCCTCTGGTTGCTTGATACAGGACATGCCTAATGGTTACTCCAAGGTTACTTGGATTGAGCATGTGGAAGTGGAAGATAGAGGCTCGACTCATTGGCTTTTTAGAGATCTTATTCATAGCGGATTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGGCTGAAAGGTTTGCTTGTTTAATGGTGACCGGTAGTTCCAATCAGGATCTTAGCGGAGTAATTCCATCGCCAGAAGGAAAAAGAAGCATGATGAAACTAGCACAACGAATGGTGAACAATTTTTGTGCTAGTATCAGCACATCCCATGGACACCGTTGGACCACCCTTTCTGGGATGAATGAGGTTGGTGTTCGTGTCACAGTGCATAAAAGCACAGATTCTGGCCAACCTAATGGTGTGGTTCTTAGTGCAGCTACAACCATTTGGCTCCCAGTTTCCCCTCAAATCATCTTTAACTTCTTTAAGAACGACAGAACCAGATCCCAGTGGGATGTTCTCTCGGATGGCAATCCAGTTCAAGAGGTTGCTCATATATCCAACGGATCTCATCCAGGGAATTGCATATCTGTTCTCAGAGCTTTCAATACAAGTCAGAACAACATGTTGATTCTCCAAGAGAGTTGCATAGACTCATCAGGGTCACTTGTTGTGTACTGCCCTGTGGATCTACCAGCCATGAATGTTGCAATGAGTGGAGAGGACCCATCAAGTATTCCTTTGCTGCCCTCAGGATTCACAATTTTACCAGACGGTCGACGGGACCAAGGAGAGGGCACATCGAGCAGCTCAGATGTGAACAACAGAGCAGGAGGCTCTCTGGTGACGGTTGCATTTCAGATACTAGTGAGCAGCTTGCCGTCTGGGAAGCTGAACTTGGAGTCAGTCACAACAGTCAATAACCTTATCAGCACCACTGTCCACCAAATCAAGACAGCCTTAAATTGTCATAGTTCTTGA 2118 46.51 MDFGGGSGWDNDSSSDPQRRKKRYHRHNANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENSHLKEELDRVSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFPSQEMGCPSLDLDLLPASSTSVPSLPYLHPIHLSSVDKSLMTEIAANAMTELLRLSQTNEPFWMKSPTDGRDLLDLETYGHAFPRPNTPLQNLHFRTEASRDSGVVIMSSATLVDIFMDSNKWTELFPTIVSIARTIEVISSGMLGSQNGSLQLMYQELQLLSPLVPTRHFYVLRYCQQIEQGVWAVVDVSYSIPRENQIVSHSQCHRFPSGCLIQDMPNGYSKVTWIEHVEVEDRGSTHWLFRDLIHSGLAFGAERWLATLQRMAERFACLMVTGSSNQDLSGVIPSPEGKRSMMKLAQRMVNNFCASISTSHGHRWTTLSGMNEVGVRVTVHKSTDSGQPNGVVLSAATTIWLPVSPQIIFNFFKNDRTRSQWDVLSDGNPVQEVAHISNGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVAMSGEDPSSIPLLPSGFTILPDGRRDQGEGTSSSSDVNNRAGGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTVHQIKTALNCHSS 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31132874 31135875 + CcPI632755_01g018590.1 Cco01g1859 170721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1859 705 SMART START_1 218 443 IPR002913 GO:0008289(InterPro)
Cco01g1859 705 SMART HOX_1 19 82 IPR001356 GO:0003677(InterPro)
Cco01g1859 705 CDD homeodomain 20 79 IPR001356 GO:0003677(InterPro)
Cco01g1859 705 ProSiteProfiles START domain profile. 209 446 IPR002913 GO:0008289(InterPro)
Cco01g1859 705 MobiDBLite consensus disorder prediction 1 26 - -
Cco01g1859 705 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677(InterPro)
Cco01g1859 705 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 10 702 IPR042160 -
Cco01g1859 705 SUPERFAMILY Bet v1-like 212 444 - -
Cco01g1859 705 CDD START_ArGLABRA2_like 213 442 - -
Cco01g1859 705 Pfam Homeodomain 21 76 IPR001356 GO:0003677(InterPro)
Cco01g1859 705 Gene3D - 9 94 - -
Cco01g1859 705 SUPERFAMILY Homeodomain-like 7 78 IPR009057 -
Cco01g1859 705 SUPERFAMILY Bet v1-like 464 697 - -
Cco01g1859 705 Pfam START domain 219 442 IPR002913 GO:0008289(InterPro)
Cco01g1859 705 Gene3D - 218 443 IPR023393 -
Cco01g1859 705 FunFam Homeobox-leucine zipper protein GLABRA 2 218 442 - -
Cco01g1859 705 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco01g1859 705 FunFam Homeobox-leucine zipper protein HDG1 8 94 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1859 Cco-Chr1:31132874 Cco05g1240 Cco-Chr5:11911439 5.60E-211 dispersed
Cco01g1859 Cco-Chr1:31132874 Cco06g0006 Cco-Chr6:87865 3.90E-188 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58666 PF01852 START 2.70E-49 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1859 K09338 - csv:101215660 1358.58