Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1862 ATGGTTTTGACGACAGTTTCAGACTCTGGAGATTCTGTGAACTGCACTTTTGGTTCCAGATATCTCCGCTCTCCTCCTCCCAAGTTCAAACTTGGGGAGCAATCTATTCCAAAGGATGCAGCGTACCAGATCATACACGATGAGTTGATGCTGGATGGGACTCCCAGGCTGAACTTGGCTTCTTTTGTAACAACTTGGATGGAGCCAGAGTGTGATAACCTCATCATGGCTTCTCTCAACAAGAACTATGTTGACATGGATGAGTACCCAGTCACCACTGAGCTACAGAATCGCTGTGTCAATATGATTGCTCGCCTCTTTCATGCCCCCATCGGAGATCAGGAAGCTGCAGTTGGTGCGGGGACTGTCGGATCATCAGAGGCTATAATGCTGGCAGGTCTTGCTTTTAAGAGGAAATGGCAGCACAGAAGAAAATCTCAAGGCAAACCCTATGATAAACCCAACATAGTCACTGGTGCTAATGTCCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAGCTTTCTGAAGGGTATTATGTGATGGATCCAGTGAAGGCTGTTGAACTGGTTGATGAGAATACTATTTGTGTTGCAGCAATTTTGGGGTCAACTCTGACTGGAGAGTTTGAGGATGTAAAACTCCTCAATGAACTTCTCTCTAAGAAGAATAAGGAAACAGGTTGGGACACCCCAATTCATGTTGATGCAGCCAGTGGAGGGTTTATTGCCCCATTCCTTTATCCCGATCTCGACTGGGATTTTCGGTTGCCTTTAGTGAAGAGCATCAATGTCAGTGGTCACAAGTATGGGCTTGTCTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTGCCTGAGGAGCTTGTCTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTTACTCTCAACTTCTCAAAAGGTTCTAGCCAAATCATCGCTCAGTATTATCAGTTTATACGGCTTGGCTTTGAGGGATACAAAAACGTGATGGAGAACTGCAGGGAGAATGCGAGGGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGAGGTTGTTTCCAAGGATGTTGGAGTGCCCCTGGTAGCCTTCACTCTCAAAGACAGCAGCAAACACACCGTGTTCGAGGTATCGGAGAACCTGAGGAGGTTTGGATGGATTGTGCCAGCTTACACGATGCCAGCGGATGCTCAGCACATAGCGGTGCTGCGCGTGGTGATTAGGGAGGACTTCAGCCGCAGTTTGGCAGAGAGACTGATCTCGGACATCGACAGAGTCTTGAAGGAAGTCGAGGCACTGCCAACTCGGGTGGCTGTGAAAGCAGCAGAAGTGAAAGCTGGCGTTGAAGATGGTGTGAGAGTTACAAAGCATGTGAAGAAGAGTGAACGGGAGATTGAGGAGGAAGTAACTTCATATTGGAGACGGCTTATGGATGGCAGGAGAACTGTTTGCTTCCTTGCTGGTGCAGTCAGTGTTTGTGACTTTGTAGTGTTGGGTTCCCTATTTCGCCTATGCGTCGGATTTCTTCTCGAAGATTGTCGAGCCACTGAGTACACTTTCAATGTCATGATTCGTGGCCACTTGACGACTTGGAATAAGTCTTTTCGTGCTCTTCAATTCTATTCTCGAATGAAATTCCTGTTTTGCGTAGAGATGATGGAAGCTGGGTTTGAGCCCAATGACATGATTTTAGTTATGGAAGTTGGGTTTGAGCTGGATGAGATGATGGAAACTGAGTTTATGGCTGACTTTAGTGTCTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGA 1842 47.34 MVLTTVSDSGDSVNCTFGSRYLRSPPPKFKLGEQSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGDQEAAVGAGTVGSSEAIMLAGLAFKRKWQHRRKSQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLDWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPEELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCRENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEVSENLRRFGWIVPAYTMPADAQHIAVLRVVIREDFSRSLAERLISDIDRVLKEVEALPTRVAVKAAEVKAGVEDGVRVTKHVKKSEREIEEEVTSYWRRLMDGRRTVCFLAGAVSVCDFVVLGSLFRLCVGFLLEDCRATEYTFNVMIRGHLTTWNKSFRALQFYSRMKFLFCVEMMEAGFEPNDMILVMEVGFELDEMMETEFMADFSVLGACGELGDLRLGT 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31156884 31161652 + CcPI632755_01g018620.1 Cco01g1862 170724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1862 613 Gene3D - 65 359 IPR015421 -
Cco01g1862 613 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 380 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cco01g1862 613 FunFam Glutamate decarboxylase 360 447 - -
Cco01g1862 613 NCBIfam glutamate decarboxylase 16 443 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cco01g1862 613 CDD DOPA_deC_like 58 438 - -
Cco01g1862 613 FunFam Glutamate decarboxylase 65 359 - -
Cco01g1862 613 FunFam Glutamate decarboxylase 4 64 - -
Cco01g1862 613 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cco01g1862 613 Gene3D - 360 447 - -
Cco01g1862 613 Gene3D - 1 64 - -
Cco01g1862 613 PANTHER GLUTAMATE DECARBOXYLASE 1 491 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0728 Cco-Chr1:7752236 Cco01g1862 Cco-Chr1:31156884 1.50E-218 dispersed
Cco01g0900 Cco-Chr1:9988502 Cco01g1862 Cco-Chr1:31156884 8.20E-36 dispersed
Cco01g0901 Cco-Chr1:9995233 Cco01g1862 Cco-Chr1:31156884 9.40E-187 dispersed
Cco01g1862 Cco-Chr1:31156884 Cco11g1225 Cco-Chr11:24349628 4.10E-08 dispersed
Cco01g1861 Cco-Chr1:31148798 Cco01g1862 Cco-Chr1:31156884 7.60E-36 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1862 K01580 - csv:101210903 946.036