Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1863 ATGGACGCATTAACTCTGAGGAGAAAGGTACAAAGGAAAGCTAAAATCAGAGGGTTGTACAGCATCAAACTAGAAGCTCTTGACAAGATTGTTTCCTTTGTTTCTCGCTTCCAAGGCTGCGAAGATGATGCTATAGATCTTGTTCTCGATAATCTCCATGATGAATCTTTGAAATCTTCAATATTAGACAAGGATGCGGTGCATCGGGTTATCAGCATTATGCTTGCAGCTGATGAAGTGGGAGAAGGAAGTCCCACTACCTCTACCAGTACACATGCTCTTTGCATCATCAACGCCTTTGATATCTCCAAGTTTCGTTATGATCCCATCAAAAAGATCTTCCATCTACATACAGGAAGCCTTCCAATTCATGGGGATGCTCCTGCTAAAGCTGCTTTATATAGAGATAGGTTTCTTCTGCTTTCCCAGAGGCTCTCCCGAGATCAGCATTTCTCCAAACCCGCTTTTGACACTGGCATGTCTCATTTTGGAAGTTGTGAGTTTGTGATATGTTTCCCAGATTTCTCCTATTCAATCTTTGGTGGGGCAAACAGGAAGAAAATGGGTCATGGGAGTGATCTCTCAAATGGAGGACGGCCACTTTTACTTGGAGGACCTTACTGCATGACATGCACTGCAGTTTTCATTAATAATAAGCACAAGATAACTACAGGTCTATTTACAGAGAACACCATTGTTGTAGCAGAAGGAGAGATGCTCGTGGAGGGTATTTTTCAGGTTGTTACATGTGGATTTCCTCCACTAGAGGAGAGGGACAAGTCTCTTAAATTGCTAGCAGGCCAGGACTTCTTTGGAGGTGGTGCTCTACCAAAAGAGGAGACTCTCAGGCTTGGAGATCTGGAGAAGAAAGCTGTTAATGATATGTTTGTCATACTTTCTGACATTTGGTTGGATAGTGAAGAGGCCATGGGAAAACTGGAGACCATACTTGATGGTTTCGAGAATGTGGAAGTGGTTCCTTCCTTATTTGTTTTGATGGGAAATTTTTGTTCCCGTCCATGCAATCTTGCCTTTAATTCTTTCTCAAGTCTCAGACTACAGTTTGGTAAGTTAGGAAAAATGATAGCAGCTCATCCAAGATTACAAGAGCATAGCAAGTTTCTTTTTATTCCTGGTCCAGATGATGCAGGACCATCAACCGTTCTACCTAGGTGTGCTTTGCCAAAGTATTTAACCGAAGAGCTTCAGATGCACGTCCCAAATGCCATTTTCTCAAGTAACCCTTGCAGGGTCAGATTCTACACCCAGGAAATTGTATTTTTCCGACAAGACCTTCTTTATAGAATGCGCCATTCCTGTCTCATACCACCTTCCACAGAAGAAACAAGTGATCCTTTCGAGCATCTTGTTGCGACTATAACTCATCAAAGTCATCTCTGCCCTCTTCCTCTGGTTATTCAACCAATTATCTGGAATTACGACCACTGTCTTCATCTATACCCTACTCCTCATGTGATAGTTTTGGGGGATAGAAGTAAGCAACAGGCATTCAAATACACAGGAATCACTTGCTTTAATCCTGGTTCCTTCACAAATGATAGCACTTTTGTGGCATATCGTCCTTGCAATCAAGAAGTTGAACTGTCTGCCTTGTAA 1617 42.3 MDALTLRRKVQRKAKIRGLYSIKLEALDKIVSFVSRFQGCEDDAIDLVLDNLHDESLKSSILDKDAVHRVISIMLAADEVGEGSPTTSTSTHALCIINAFDISKFRYDPIKKIFHLHTGSLPIHGDAPAKAALYRDRFLLLSQRLSRDQHFSKPAFDTGMSHFGSCEFVICFPDFSYSIFGGANRKKMGHGSDLSNGGRPLLLGGPYCMTCTAVFINNKHKITTGLFTENTIVVAEGEMLVEGIFQVVTCGFPPLEERDKSLKLLAGQDFFGGGALPKEETLRLGDLEKKAVNDMFVILSDIWLDSEEAMGKLETILDGFENVEVVPSLFVLMGNFCSRPCNLAFNSFSSLRLQFGKLGKMIAAHPRLQEHSKFLFIPGPDDAGPSTVLPRCALPKYLTEELQMHVPNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRHSCLIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSAL 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31162101 31166394 + CcPI632755_01g018630.1 Cco01g1863 170725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1863 538 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 5 538 IPR016266 GO:0003677(InterPro)|GO:0006261(InterPro)|GO:0006261(PANTHER)|GO:0008622(InterPro)|GO:0008622(PANTHER)|GO:0042276(PANTHER)
Cco01g1863 538 Gene3D - 305 534 - -
Cco01g1863 538 Pfam DNA polymerase alpha/epsilon subunit B 296 501 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Cco01g1863 538 Gene3D - 1 73 - -
Cco01g1863 538 PIRSF DNA_pol_epsilon_2 1 538 IPR016266 GO:0003677(InterPro)|GO:0006261(InterPro)|GO:0008622(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1863 K02325 - csv:101207444 895.96