Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1868 ATGATAGGCAATACGGCCACCTCGGCCTCCCCAGTTCTTCCTTCCTCGGAACCTTACTCTTGCTTAGAAAATGGAAACAACAACAACAGCAGCAACAGCAAGAGGAAAAGAAGGCCTGCAGGCACCCCAGATCCGGATGCAGAGGTGGTGTCTCTATCCCCAAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAGATGCACAGGCGACGGCATAAGGTCCCTTGGAAGCTGCTGAAGAGGGAGACTCCTGTTGTGCGTAAGAGGGTTTTCGTATGCCCGGAACCCACCTGCCTGCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCACTTCCGAAGGAAGCACAGCAACCACAAACAGTGGGTTTGTGAAAAATGCTCCAAGGGCTACGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGCGGCACTCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCCCGGGTGGAAAGCTTTATAGAACACCAAGATGCTTGCAATATGGGGCATCTCCGACAAGAATCCCAAACCATTCAGCCCGCCGCATGTTTGTCCAGAACGGCTTCGAGTCCAAGCCCATCCAGCGACACTAACTTCAGCAGCGCCGCTCCCAATAATTGGCCTGCTCTCGTTGCGCCACCCACATTAAAGCCCGTGGATGCCATCTTCTTAGTCCCCACGGACGACTCCAACAACAACACTAATAACGATCACAATTTAGACCTCAAACTATCAACTGCATCAAATGGCGTGGAAGGGCGGAGCAATAATAAAGGCTCTTCAACGAAACTCCAGCTCTCCATCGGGTCGTTTGATTTTGGAGACAAGAAAAAGATGTTGAAATTGGATGATGAGAAGAAAGGTGGGTTCTGGGGCGGGGCTGGGGATGTTAGAGAAGAAGCTCGGGAGGAGCTAAGGGTGGCAATGGCGGAGAAGGCGTACGCGGAGGAAGCAAGGCAACAGGCGAAGCAGCAAATAGAAATGGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCCCAGGCGGAGTTAGATAAGGCCACAGCTCTTAAACAAGCAGCAATCAAACAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAGCTAAACCAACAACGACAACGACGAGTGCAGCCACGGATCATGACAATTATTCTGTAGCATTCAGTTACGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACCATTATACCTAAACCACCCAACAATTAA 1353 51.15 MIGNTATSASPVLPSSEPYSCLENGNNNNSSNSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTIQPAACLSRTASSPSPSSDTNFSSAAPNNWPALVAPPTLKPVDAIFLVPTDDSNNNTNNDHNLDLKLSTASNGVEGRSNNKGSSTKLQLSIGSFDFGDKKKMLKLDDEKKGGFWGGAGDVREEAREELRVAMAEKAYAEEARQQAKQQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKAKPTTTTTSAATDHDNYSVAFSYVSSVITTEGEVEKDQSTIIPKPPNN 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31219516 31221515 + CcPI632755_01g018680.1 Cco01g1868 170730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1868 450 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 139 163 - -
Cco01g1868 450 Gene3D Classic Zinc Finger 40 103 - -
Cco01g1868 450 MobiDBLite consensus disorder prediction 1 36 - -
Cco01g1868 450 MobiDBLite consensus disorder prediction 204 223 - -
Cco01g1868 450 Coils Coil 320 382 - -
Cco01g1868 450 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cco01g1868 450 SMART c2h2final6 104 134 IPR013087 -
Cco01g1868 450 SMART c2h2final6 63 85 IPR013087 -
Cco01g1868 450 SMART c2h2final6 140 167 IPR013087 -
Cco01g1868 450 CDD ATP-synt_Fo_b 316 397 - -
Cco01g1868 450 FunFam protein indeterminate-domain 12-like 42 110 - -
Cco01g1868 450 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
Cco01g1868 450 Gene3D Classic Zinc Finger 125 203 - -
Cco01g1868 450 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 385 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco01g1868 450 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 167 201 - -
Cco01g1868 450 SUPERFAMILY beta-beta-alpha zinc fingers 60 86 IPR036236 -
Cco01g1868 450 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 100 134 - -
Cco01g1868 450 MobiDBLite consensus disorder prediction 1 50 - -
Cco01g1868 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1629 Cco-Chr1:28999151 Cco01g1868 Cco-Chr1:31219516 1.80E-113 dispersed
Cco01g1868 Cco-Chr1:31219516 Cco08g1706 Cco-Chr8:28416846 3.70E-59 dispersed
Cco01g1868 Cco-Chr1:31219516 Cco04g1699 Cco-Chr4:32146844 2.90E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58668 PF00096 zf-C2H2 0.0042 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1868 K25871 - csv:101209426 718.383