Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1885 ATGATTCGGAAGAATGCCGTTGAAAGTATTTTGGCAGAACGTGATATTTTAATCTCTGTGCGCAACCCTTTTGTGGTCCGCTTCTTCTACTCTTTTACTTGTCGTGACAATTTGTATCTTGTGATGGAGTATTTGAATGGAGGAGACCTTTACTCCTTGTTGAGAAATTTGGGCTGCTTAGATGAAGATGTTGCTCGCGTATATATCGCAGAAGTTGTTCTTGCTTTGGAGTATCTGCATTCACTTGGGGTAGTTCATCGGGACTTAAAGCCTGATAATTTATTAATAGCACATGATGGTCATATTAAGCTGACAGATTTTGGGCTTTCCAAGGTTGGTCTAATCAACAGTACTGATGATTTGTCTGGACCAGCTGTTAGCGGGACCACTCTTCTTGGCTATGATGAACCTACAATGTCTGCTTCTGAGCATCAACAAGAAAGACGGAAAAAGCGTTCTGCTGTTGGCACACCAGACTATTTGGCACCAGAGATACTATTGGGAACTGGACACGCTGTTTCGAGTTCAGGAGGGTGTGGCCTTGTGGGTTTCGTTTTCCTTTTAATACTGATTTTCTGA 579 42.31 MIRKNAVESILAERDILISVRNPFVVRFFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEDVARVYIAEVVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHAVSSSGGCGLVGFVFLLILIF 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31344574 31347427 + CcPI632755_01g018850.1 Cco01g1885 170747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1885 192 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 173 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cco01g1885 192 FunFam AGC protein kinase 45 116 - -
Cco01g1885 192 Pfam Protein kinase domain 6 112 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1885 192 SUPERFAMILY Protein kinase-like (PK-like) 3 171 IPR011009 -
Cco01g1885 192 ProSiteProfiles Protein kinase domain profile. 1 192 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1885 192 CDD STKc_MAST_like 1 171 - -
Cco01g1885 192 Gene3D Phosphorylase Kinase; domain 1 2 44 - -
Cco01g1885 192 ProSitePatterns Serine/Threonine protein kinases active-site signature. 84 96 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1885 192 SMART serkin_6 1 192 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1885 192 Gene3D Transferase(Phosphotransferase) domain 1 45 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1885 Cco-Chr1:31344574 Cco06g0736 Cco-Chr6:8388269 4.40E-33 dispersed
Cco01g1885 Cco-Chr1:31344574 Cco05g2046 Cco-Chr5:29528296 8.20E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86538 PF00069 Pkinase 7.30E-37 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1885 K08789 - csv:101214945 338.576