Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0002 ATGGCGATGTTTTCCGTGAAAGCGCGGCTATTTCTGGCTTTCTTCTTTGTTATTGGAATTCATAACATCTTCTCCTACACAGATCCGAATGATGTTGAAATCCTGTTATCGTTGAAAGAGGTATGGAAAAATACGCCACCGACATGGAGGACATCAAGCGATCCATGTGGAGATCTCTGGGAAGGAGTCAGTTGCAACGATTCTAGAGTCACTGAATTAAAATTACCCTATATGGGCCTTGAAGGCCATCTTAGTGGTGACATTGGAGGCCTTACTGAACTAATAACATTGGACCTGTCATTTAATAGATATCTCACTGGTCCACTCTCTCCTAGGTTGGGGGATTTGCGAAATTTGAAGACCTTAATTCTAGCTGCATGTGGCTTCAGTGGTAATATTCCCCAAGAGTTGGGAAACCTTACTCAGTTGATGTCCTTGGCTTTGAATTCAAACCAACTCATTGGTTCTATACCACGTAGTCTTGGAAAACTCTCCAAACTGGTTTTGCTAGACTTGATGGAGAATCAGTTGAATGGATCTCTCCGTGTCTCAACTTTTGATTCATCAGGTCTGGACCTTCTTCTCCAAGCAAAGCACTTTCACTTGAGCAAGAACAGGCTGTCAGGCTCTATACCCCCTAAGCTTTTTAGCGCTGATATGAAATTAATACACATAGTATTTGATCAGAATCAGTTTTCTGGGAGTATTCCACAAACCTTGGGACTTGTTAACACCCTTGAACTTCTCCGACTTGATAGGAATTCTCTAACAGGAATTGTCCCATCAGATCTTACCAACTTAAAACAAATCCTTCAGTTGAATTTAGCACACAATAATCTGACAGGGCCGTTGCCAAATTTAACTCAAATGACTTCACTATGTGTTGTGGACCTTAGTTACAACTCATTTGATGCATCAACAGCCCCAGATTGGTTCTCAAGCTTACCATCTCTCACCAGTTTGATCGTTGAATATGGGGAACTGGAAGGACCTGTCCCAGAAACAATCTTCAGCTTACCACAGATACAACAAATAAAACTGGGCCACAATTTATTTGGTGGGATATTGAGGATGGGTGGTAACATCAGTCAGCATCTGGAGCTTGTTAATTTGGAAGACAATCATATTACCCAATTTGAATTATTATCTGGATATAACAAAACTTTGATGCTTGAAGGAAATCCTGCGTGCAATAATAATGTTGGTCCCCTCGTGAAACAAAATCATTATTGCCTACCTAATTCACAACCAGCTGATCTAAAGCCTAATTTTGGGAGTCCAGTACTCAACTGTGAAACTAGATTGTGCTCTAATGGCGAGAAGAATAACCCTCAAAGCTCTCCAGATGTTGGAAATTTTAGTAGCATTAGCAACAGGTGGCTTATTGGGATTGCAATTGGTTGTGGCTTACTGCTCCTAACCCTATTGGGAGTTGGAGTATATGCAATTAAGCAGAAGAAAAGAGTATCAAAAGCGATTTCATTGAGCAAGCCATTTGCTTCCTGGTCATCTATTGAACAAATAAGTGGAGAAGCACCACAATTAAAGGGAGCCATATATTTTTCTTATGATGAGCTTAGGAAGTTGACAAATAATTTCTCCATAAGTAATGAGATTGGAGCTGGAGGATATGGGAAGGTCTATAGAGGAATTACTGGGTATGGACAAGTTTTTGCAATCAAAAGAGCTAGGCAAGGCTCGAAACAGGGTGCACATGAGTTTAAGACTGAGATTGAATTGCTTTCACGAGTTCATCATAAGAATCTTGTTGGCCTTGTAGGATTTTGTTGTGAACAGGGAGAACAGATGCTTGTTTATGAATTCATGCCTTATGGATCGCTTCGTGACAACCTTGGGAGTTGTGTCCATCTTGATTGGAAGAGAAGACTTGAGATAGCACTTGACTCTGCAAGAGGACTAGCTTACCTTCACGAGTTTGCAAATCCTCCAATAATCCATAGAGATATTAAGTCCTCCAATATTCTTTTAGATGAATATTTTAAGGCGAAGGTTGCAGATTTTGGCCTGTCCAAGCTTGTATTTGACCATGAAAAGGGACATATTTCTACTGGAGTTAAAGGCACGTGGGGGTATTTAGATCCTGAATATTACACAACGCAACGATTAACTGAGAAGAGTGATGTGTACAGCTTTGGAGTTGTTATGCTTGAATTGATTACTTCTAATCGGCCAATTGAGAAAGGGATATATTTAGTTCGTGAAGTGGTTCGACTAATGAACAAGAGCGACAAAGCATATTACGGATTGATGGATATAATAGATGCAACTGTTATAAATGAGATGACAAATCCAATTGAGTTTGGAAGGTTTTTAGAGTTGGCCATAAAATGTGTTGAAGAATCAACTATAAATCGCCCCACGATGAGCCAAATGAAGACTTACAAAGATAGGGTCACAAGGAAGGCAAAGGCCAAAGCTTGCATATATGCAGCAGTGGCTCCTGTTGTATTTAACAGAATCATGGCCTTGAAGTTAACAAAGGAGATCTGTGAATTCCTCAAAGCAAGGCGAAGGTGGAAAAGAGAAGAAGTGGACAGGGAAAAAGGGAAGTGGCGCAGTAGCTCAGAATCTGCAGTAAAGGATGCTGGAATTGCGGGCTTCAGTAAAGGCAGTGCATGCAAGCACTGTGAGATGCAGAATCATCCACCCTTTAGATGCTGGACAACGCCAGATGTGAAGTGTGACAAGGAGTTGTTCAAAGACCTTGACAAGTCATTTAAGTCCATGGTGAAGATAGGGAATGAAATGGATGGAGCCAATGAATGGGGAGCTGAGAATAATAGAGAAGAACAAGACATGGAGTTGGTAGAAAAGCCTGAAAACAAGAAAGTGATTCCCGATGGCTCTGTGAACAAGCTTAAGGCTAGATTAGTGGTGAAATGGCATGCATAA 2913 40.82 MAMFSVKARLFLAFFFVIGIHNIFSYTDPNDVEILLSLKEVWKNTPPTWRTSSDPCGDLWEGVSCNDSRVTELKLPYMGLEGHLSGDIGGLTELITLDLSFNRYLTGPLSPRLGDLRNLKTLILAACGFSGNIPQELGNLTQLMSLALNSNQLIGSIPRSLGKLSKLVLLDLMENQLNGSLRVSTFDSSGLDLLLQAKHFHLSKNRLSGSIPPKLFSADMKLIHIVFDQNQFSGSIPQTLGLVNTLELLRLDRNSLTGIVPSDLTNLKQILQLNLAHNNLTGPLPNLTQMTSLCVVDLSYNSFDASTAPDWFSSLPSLTSLIVEYGELEGPVPETIFSLPQIQQIKLGHNLFGGILRMGGNISQHLELVNLEDNHITQFELLSGYNKTLMLEGNPACNNNVGPLVKQNHYCLPNSQPADLKPNFGSPVLNCETRLCSNGEKNNPQSSPDVGNFSSISNRWLIGIAIGCGLLLLTLLGVGVYAIKQKKRVSKAISLSKPFASWSSIEQISGEAPQLKGAIYFSYDELRKLTNNFSISNEIGAGGYGKVYRGITGYGQVFAIKRARQGSKQGAHEFKTEIELLSRVHHKNLVGLVGFCCEQGEQMLVYEFMPYGSLRDNLGSCVHLDWKRRLEIALDSARGLAYLHEFANPPIIHRDIKSSNILLDEYFKAKVADFGLSKLVFDHEKGHISTGVKGTWGYLDPEYYTTQRLTEKSDVYSFGVVMLELITSNRPIEKGIYLVREVVRLMNKSDKAYYGLMDIIDATVINEMTNPIEFGRFLELAIKCVEESTINRPTMSQMKTYKDRVTRKAKAKACIYAAVAPVVFNRIMALKLTKEICEFLKARRRWKREEVDREKGKWRSSSESAVKDAGIAGFSKGSACKHCEMQNHPPFRCWTTPDVKCDKELFKDLDKSFKSMVKIGNEMDGANEWGAENNREEQDMELVEKPENKKVIPDGSVNKLKARLVVKWHA 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34621 52951 - CcPI632755_02g000020.1 Cco02g0002 170759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0002 970 FunFam Predicted protein 189 406 - -
Cco02g0002 970 Gene3D Ribonuclease Inhibitor 188 287 IPR032675 -
Cco02g0002 970 Gene3D Ribonuclease Inhibitor 288 411 IPR032675 -
Cco02g0002 970 SUPERFAMILY L domain-like 34 302 - -
Cco02g0002 970 SUPERFAMILY Protein kinase-like (PK-like) 505 799 IPR011009 -
Cco02g0002 970 SMART serkin_6 533 806 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0002 970 CDD STKc_IRAK 539 797 - -
Cco02g0002 970 PANTHER RECEPTOR-LIKE PROTEIN 55 42 798 - -
Cco02g0002 970 FunFam receptor-like protein kinase FERONIA 500 608 - -
Cco02g0002 970 FunFam Leucine-rich repeat family protein 30 186 - -
Cco02g0002 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0002 970 SUPERFAMILY L domain-like 286 396 - -
Cco02g0002 970 Gene3D Phosphorylase Kinase; domain 1 500 608 - -
Cco02g0002 970 Gene3D Transferase(Phosphotransferase) domain 1 609 819 - -
Cco02g0002 970 Gene3D Ribonuclease Inhibitor 29 187 IPR032675 -
Cco02g0002 970 ProSiteProfiles Protein kinase domain profile. 533 805 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0002 970 FunFam Leucine-rich repeat receptor-like protein kinase 609 813 - -
Cco02g0002 970 ProSitePatterns Protein kinases ATP-binding region signature. 539 561 IPR017441 GO:0005524(InterPro)
Cco02g0002 970 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Cco02g0002 970 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Cco02g0002 970 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cco02g0002 970 Pfam Protein tyrosine and serine/threonine kinase 535 746 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0002 Cco-Chr2:34621 Cco10g1305 Cco-Chr10:26022845 5.70E-214 dispersed
Cco04g1188 Cco-Chr4:27322366 Cco02g0002 Cco-Chr2:34621 1.10E-12 dispersed
Cco02g0002 Cco-Chr2:34621 Cco10g2277 Cco-Chr10:35617199 2.50E-238 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86539 PF07714 PK_Tyr_Ser-Thr 1.30E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0002 - - - 0.0