Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0011 ATGGAACAAAACCCAGCATTCCGTTTTGTGGTTATCGATTTTCTGCATTCTGGGAGGAGAAGGGCAAGGCAAGCAGTGGTTTTATCGACTCGTTATGGGAATATGGATAGTGCATTCATGTCCAGTGGAGAAGTGGAAGCTTCTTTGACTCTTTTAAAATCAATGATGTTAAAAGCAGAGGCTCAAAGGTGCCATGGGAACACAGATTCTAATGCTCATTCTCATTCGGATTCCACCATCAACTGGCAGCAGAAGGAAGCAGCAGCTCATGCTCAGACACCACCTTATTCTCTCTCTCTTATTGCTTTTCTCATGATTTTTCACAATCCCACCTTGCATTTTCATTCTCAATGCTTTGTGGGGCCCTTGCACTTGCACTACAGATTTTCCTCTTATCATTCAGTTTCCCATGATTGTATTAGTTTATTTAACATTGTCTCCTGCTTCTGTTTCTCTAGCATGATCCATTCTTCTTTGCTTGCAGCTTTTGCAGCCTCAGAAGCCATGCCTCTTTCTAAAGGAGGTACTCCTATGTTTTCAATGCTTTATAGATGGAACTCCTTAAGACTGATCATTCAGGGGCTGCTACTGTTCTCATTGTTGAGGTCGAATCATGCATCAACGGATCCTGATGTGGAAGGAGAAGCTTTGGTTGACTTGTTAGGGGCACTGAATGATTCCGATCATCAGATTACTGATTGGAATTATCATCTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCCGAAATGGAAATGTCATATCCTTGAGCTTGGGTTCAGTAGGATTTTCAGGATCACTTTCTCCCTCAATTACCAAACTGAAGTATTTGGCTAGCCTGGATTTGCAGAACAATAATATAGCTGGTGTTATACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCTATACCTGCAGCTTGGGGTCGACTTGTGGGTCTAAAGCATCTGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCGCAGTTCTTTTCAATTCCAATGTTCAACTTTTCAGGAACTGGTTTAAATTGTGGGTTTAGGTTGGATAAACCTTGTGTTTCGACATCTCCCCATCGAGCTTCTGCAAAGAATTCAAAGTTTGGGGTAGTGGCGAGTACTGCAAGTTGTGGGGGTTTCATACTTCTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTACGTGCATAAGCTTAAGGATCCTATGTTTGTTGATGTTGCTGGTGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCATTGCGGGAAATCCAACTTGCTACCGATAACTTTAACGAAGCGAACATCATTGGCCAAGGAGGCTTTGGAAAAGTATATAAAGGCATCCTCTCGGATGCCTCCAAGGTGGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGCGGGGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCGGTGCATAGAAATCTCCTCCGGTTGATTGGGTTCTGCACAACCACATCTGAGAGAATCCTCGTTTATCCATTCATGCAGAATCTTAGCGTGGCACATCGCTTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGACTGGGCCACGAGGAAACGAATTGCTTTCGGTGCAGCTCATGGTTTGGAGTATTTGCATGAGCACTGTAATCCTAAGATCATTCATCGCGATCTGAAGGCTGCGAATATCTTATTAGACGATGACTTTGAAGCTGTTCTTGGAGATTTCGGGCTGGCTAAGCTAGTTGATACTAAAGTGACTCATATTACCACTCAAGTGCGTGGTACGATGGGTCACATTGCCCCAGAATACCTGTCCACTGGAAAGTCGTCCGAAAAGACAGATGTTTTTGGATATGGTATCACCCTTCTTGAACTTGTCACTGGCCAGCGAGCAATAGATTTCTCCCGCCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGTTGCAGAGGGAGAATAGGCTTGAAGATGTGGTGGACAAAAACTTAAGAAGCTACAATGAGAAAGAAGTCGAAAACATAGTTCAGGTGGCACTGCTTTGCACTCAAAGCTCACCCGAGGACCGACCCACAATGGCGGAAGTTGTGAATCTACTACATGGAGAAGGGCTGGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGTAAGAGATCAGGAAGTTTCCCTCTTGTGTCACCAATTTGTTTGGGGTGAAGAGTCAAGTCATGATCAAGAAGCCATACAGTTGTCTAAAGCCAGATAG 2319 43.47 MEQNPAFRFVVIDFLHSGRRRARQAVVLSTRYGNMDSAFMSSGEVEASLTLLKSMMLKAEAQRCHGNTDSNAHSHSDSTINWQQKEAAAHAQTPPYSLSLIAFLMIFHNPTLHFHSQCFVGPLHLHYRFSSYHSVSHDCISLFNIVSCFCFSSMIHSSLLAAFAASEAMPLSKGGTPMFSMLYRWNSLRLIIQGLLLFSLLRSNHASTDPDVEGEALVDLLGALNDSDHQITDWNYHLVSPCFSWSHITCRNGNVISLSLGSVGFSGSLSPSITKLKYLASLDLQNNNIAGVIPDYLANMTHLQNLNLANNNFNGPIPAAWGRLVGLKHLDLSDNNLTGEVPAQFFSIPMFNFSGTGLNCGFRLDKPCVSTSPHRASAKNSKFGVVASTASCGGFILLSIGAFFAYRCFYVHKLKDPMFVDVAGEDECKLCFGQIRRFSLREIQLATDNFNEANIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWATRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLRSYNEKEVENIVQVALLCTQSSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHQFVWGEESSHDQEAIQLSKAR 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 137649 144459 - CcPI632755_02g000110.1 Cco02g0011 170768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0011 772 Pfam Protein tyrosine and serine/threonine kinase 454 722 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0011 772 FunFam Leucine-rich repeat receptor-like kinase 212 322 - -
Cco02g0011 772 SUPERFAMILY Protein kinase-like (PK-like) 431 723 IPR011009 -
Cco02g0011 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 573 585 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0011 772 Pfam Leucine rich repeat 279 337 IPR001611 GO:0005515(InterPro)
Cco02g0011 772 Gene3D Transferase(Phosphotransferase) domain 1 527 743 - -
Cco02g0011 772 SMART serkin_6 450 723 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0011 772 Pfam Leucine rich repeat N-terminal domain 213 250 IPR013210 -
Cco02g0011 772 Gene3D Phosphorylase Kinase; domain 1 419 526 - -
Cco02g0011 772 SUPERFAMILY L domain-like 214 349 - -
Cco02g0011 772 ProSitePatterns Protein kinases ATP-binding region signature. 456 478 IPR017441 GO:0005524(InterPro)
Cco02g0011 772 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 195 771 - -
Cco02g0011 772 FunFam Somatic embryogenesis receptor-like kinase 1 527 743 - -
Cco02g0011 772 FunFam Somatic embryogenesis receptor kinase 1 419 526 - -
Cco02g0011 772 Gene3D Ribonuclease Inhibitor 210 370 IPR032675 -
Cco02g0011 772 ProSiteProfiles Protein kinase domain profile. 450 736 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0011 Cco-Chr2:137649 Cco07g1803 Cco-Chr7:32168377 5.30E-162 dispersed
Cco02g0011 Cco-Chr2:137649 Cco07g1802 Cco-Chr7:32152248 1.10E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86540 PF00069 Pkinase 6.30E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0011 - - - 0.0