Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0024 ATGGAAAATGGTTTCGACGGGAGATCATTGGCCGAAAAATTCTCTGAGTTGGGCGTCAGTGCTACTCCAGCAGAGCAATCTAACTCCCACTCATCCAACAATCACGGTAACAACAACGACAGCAACTTGTTTCAGATTTTGAAAGCTGTTGAAGCAGCTGAGGCTACCATTAAGCAACAGATGGAGGAAAATAATCGACTGAGGATTGAACTTCAGAAAAAGATTCAGGAACTTGAGAAACTTAATGTTGATGAGCCTTTGGCTCAAAGGTTTCATTCCACAAACCAGTGGAATGATATTGACCATCATGGATCTAATGGGGGTCATCAATCAGATAATTCAGTTGATAACGAACGACGGAGATTTAAGAATAACATTTCTATTGTTGATTCGCATGGAACGCTAGTTCTCCATCAAGGTGTTGAGCAAAAAGATGAAGTACCCATGCGAGTTGATACAGAATCTCGCTTTGAGGACAGCAAGTCAGACAGGATGGTGAATGCTCTTCCCGGTGTTCAGCCTCCAGTTGATAACGCCGGTTGCTCACAGTTCTCTTCACCATCTACGACATCTTTCTCTGCTAGCAGGTTTACAATGGATGTAGAATATGATCCACGGATTAAGTTGTCTGGACATGGCATAATGCCAAAGGGTGAAGCAAATAATCCCAACAGTCTCTGGAAGCAGGACCTTGTTGTTAAAGTCCAGGAACATGAAGATGAAATTGTGCAGTTACGCAAGCATCTTGCTGATTATTCAATTAAGGAAGCACAAATACGAAATGAAAAATATGTTCTGGAAAAACGTATTGCGTATATGCGTTTGGCCTTTGATCAACAACAACAAGATCTTGTTGATGCTGCTTCTAAAGCTCTCTCATACAGACAAGACATAATTGAGGAAAATATTCGTCTTACATATGCGTTGCAGGAAGCACAACAGGAGAGAACCACCTTTGTGTCATCTCTACTGCCTCTTCTTGCGGAATATTCACTGCAGCCTCCTGTTCCAGACGCTCAGTCCATCATCAGCAATGTCAAGATTCTATTTAAGCACTTGCAGGAGAAGCTTCTTCTCACTGAGACAAAATTGAAGGAGTCCCAGTATCAATTGGCACCTTGGCGTTCTGATGCAAGCCACTCGAGTTTTGCACCACAGTCACCCTTCCATTCTATTGGTGCAACCTTGACCGCTTCAACTAAAAATGGCCTTGAACTGGTTCCTCAACCTTCGTACTGGAATGGAAAGATGCCAGTTTCTTCTTCTGATGCTCAGACCACAGCTGATTGGGATCTATCAACTCATCATCAGATTGGTTTAGGTGTTGGTGTTGCAAAAAAGTTGGAACCAGATGATTTGGGGAGGTATTCACATCATGCAAGCAGTGAGGGAACAAACAAGCAGGTGACATTCCGTGAACCTGTAAGCAATAGTGAGATTGATGACCAGGATGTGGTCCACCAAACAGAGAGAGAAACTATCACCAACTGGAGTTCTGGGCAATCCCCTCCTCCTGCCACTTTTGATGAGCCAAGCTCTTCTCATTCTCCAATTCTGCCTCCAGTCCTCGAGGAACCTTCACCTTCATTTTCTGAAGATGATGATCCATTACCTGGTATTGAGGCCCTCCAAATATCTGGCGAAGCTTTTCCAGGACAAGATCTCCAAGCATGTGGATACTCAATTAATGGAACAACTAGCTGTAATTTTGAGTGGGTACGCCATTTGGAAGATGGATCTGTAAATTACATTGAAGGGGCGAAGCAACCAAACTATCGTGTTACTGCGGATGATGTCGACACCTATCTGGCTATTGAAGTCCAGCCTTTGGATAACAGAAGGCGCAAGGGAGGGCTTGTAAAGGTTTATGCCAATGATCACCGAAAGATAACTTGTGATCCCGAAATGCAGAACCATATAGAGAAGACTCTGTATAGTGGTCATGCATCATATAAAGTATCCATGTCGGCTGGATATCTTGATATATGGGAAGCAGCTACACTGTCCATCAAAAGGGAAGGATACAGTATAAAATGTAGTGGGTCTAGTGGTGATGTCATAACAGAAAAGTTTTCTCCAAATACAATTGTTTCAATTCCATTTGGACAGCCGTATGAGTTTATAATAACTGGTCCGAACAATGTTGAGCATCACTTGCGAGTGGACAGCAATTCTGCTGATATTAGCTGTTTCAGAGATACCATTGTGCTAACCTTGAGATTATTTATTCTAAGGGCTAGCGAGAGAAGAAAAGGAAAAAAGCGAGTTTTGTTCTTTCACAACGGTTGCATTGCAAAGGGAACTTTGAATTTATCTTCGAGGGAGCTTCTTCTTGATTTTTCAAAGGTTTATCCTCTGCTTAGTTATGGCCACTACCATATTCTTTGCTTTTCTTCTTTAGGGCTTATGTTTGAGAACTCATGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCCTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACGTTCGAAACTGAATTAGGTGGTGTCATTCCGGTCGTTAAAACATCTATTGATGGCACTCGCATTATTGGCCGTCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACTGACCAAGAACTTCAGCACTTGAGGAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGATTGTCTGCTCTGGGGAATACAATTGCTTGTAATGATCATGTTGCTCTCACACATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTGGAGGTCTTTAGGCAGACAGTAGCGGGCAACGTCCTTGTGGGAAGCTACTGTAGCTTCACGAATAGGGGTGGCTTGGTTCATCCACATACGTCTGTTGAAGATCTGGATGAGCTATCAACCCTTCTTCAGGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGACTGGACTGCATTTTGTGGTTCGGACACCACAGCCACCGAGTTATCGGTGATCGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGATAGTTACGTATGA 3129 43.18 MENGFDGRSLAEKFSELGVSATPAEQSNSHSSNNHGNNNDSNLFQILKAVEAAEATIKQQMEENNRLRIELQKKIQELEKLNVDEPLAQRFHSTNQWNDIDHHGSNGGHQSDNSVDNERRRFKNNISIVDSHGTLVLHQGVEQKDEVPMRVDTESRFEDSKSDRMVNALPGVQPPVDNAGCSQFSSPSTTSFSASRFTMDVEYDPRIKLSGHGIMPKGEANNPNSLWKQDLVVKVQEHEDEIVQLRKHLADYSIKEAQIRNEKYVLEKRIAYMRLAFDQQQQDLVDAASKALSYRQDIIEENIRLTYALQEAQQERTTFVSSLLPLLAEYSLQPPVPDAQSIISNVKILFKHLQEKLLLTETKLKESQYQLAPWRSDASHSSFAPQSPFHSIGATLTASTKNGLELVPQPSYWNGKMPVSSSDAQTTADWDLSTHHQIGLGVGVAKKLEPDDLGRYSHHASSEGTNKQVTFREPVSNSEIDDQDVVHQTERETITNWSSGQSPPPATFDEPSSSHSPILPPVLEEPSPSFSEDDDPLPGIEALQISGEAFPGQDLQACGYSINGTTSCNFEWVRHLEDGSVNYIEGAKQPNYRVTADDVDTYLAIEVQPLDNRRRKGGLVKVYANDHRKITCDPEMQNHIEKTLYSGHASYKVSMSAGYLDIWEAATLSIKREGYSIKCSGSSGDVITEKFSPNTIVSIPFGQPYEFIITGPNNVEHHLRVDSNSADISCFRDTIVLTLRLFILRASERRKGKKRVLFFHNGCIAKGTLNLSSRELLLDFSKVYPLLSYGHYHILCFSSLGLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 289626 316965 + CcPI632755_02g000240.1 Cco02g0024 170781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0024 1042 Coils Coil 295 315 - -
Cco02g0024 1042 MobiDBLite consensus disorder prediction 97 112 - -
Cco02g0024 1042 PANTHER EXPRESSED PROTEIN 10 748 - -
Cco02g0024 1042 SMART eIF6neu2 800 1001 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cco02g0024 1042 FunFam Eukaryotic translation initiation factor 6 799 1022 - -
Cco02g0024 1042 Gene3D - 800 1022 - -
Cco02g0024 1042 FunFam Transmembrane protein 538 619 - -
Cco02g0024 1042 MobiDBLite consensus disorder prediction 19 41 - -
Cco02g0024 1042 CDD IF6 804 1020 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cco02g0024 1042 SUPERFAMILY Pentein 803 1021 - -
Cco02g0024 1042 NCBIfam translation initiation factor IF-6 803 1021 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cco02g0024 1042 MobiDBLite consensus disorder prediction 453 537 - -
Cco02g0024 1042 Coils Coil 50 84 - -
Cco02g0024 1042 Coils Coil 228 255 - -
Cco02g0024 1042 MobiDBLite consensus disorder prediction 97 116 - -
Cco02g0024 1042 MobiDBLite consensus disorder prediction 20 41 - -
Cco02g0024 1042 Hamap Translation initiation factor 6 [eif6]. 787 1042 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cco02g0024 1042 Gene3D - 539 617 - -
Cco02g0024 1042 MobiDBLite consensus disorder prediction 459 476 - -
Cco02g0024 1042 MobiDBLite consensus disorder prediction 490 514 - -
Cco02g0024 1042 Pfam eIF-6 family 803 1000 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0024 Cco-Chr2:289626 Cco06g1385 Cco-Chr6:24341633 2.20E-134 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0024 - - - 0.0