Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0029 ATGGATGGAAGAGGGAATATTGTTCATGAACCTCCAAATGCAAAGTTTGAATTCACTCCAACATGGATCATTGCTGTTGTTTCATCTATTATTGTTATCATTTCCTTCTCTGTTGAGCGTGGCCTTCATCGCCTTGGACAGGGAAAAGTTCCTCTATTGTCCTTGGAAGCTTTGCATCAGCTGCATATTTTCATATTTGTGTTGGCTGTTGTTCATGTCATCTTCTGTGCTACAACCATGCTTCTAGCTTCTGCAAAGATACGGTTGTGGAAGAGGTGGGAGAATTCTATTCATCGGGGAACTACAATATCTCAAGATGATAATGAGTTTAAAGAACGTGCCGAAGGATTTTGGAAAAATGCTGCTGTCATAGCTTGGATGGTTGCATTTGCGAAGCAGTTTCATGGATCAATCACAAAGTCCGATTACATTTATCTTCGACAAGGCTTTATTAAGAAACATTGCCCTGGGGAACCTAATTTTAATTTCTATGACCACATTACAAAGACATATCAACATGATTTCAAGAAAGTTGTCGGTATAAGTTGGTATCTTTGGGCCTTTGTTGTGCTCTTCTTGCTGCTTAATCTTGAAGGATGGCACACTTATTTTTGGATGTCGTTTCTTCCACTAATTATGTTACTTCTAGTGGGGGCAAAGTTGGAATACGTAATAACACGTATGGCTCAAGAATTAAACTCGAGAATAGAAGACAAAGAAGCACAACAAGAACAAGTACATGACAACATTAATAGATTTCATAGACAACATAAGGAAATCAAAAGACATGGTAGCCGCCATGTAGTGAATCCCTCAAACGAACACTTTTGGTTTGGTCGTCCTTCTCTTGTTCTTGTCTTGATTCATTTCATTCTCTTTCAAAATTCCTTCGAGATTGCCTTCTTCTTTTGGATTTGGACAACTTATGGATTTAAGTCATGCATTATGGACAAACCTGCGTTCATCATCACTAGACTCATCTTGGGTGGCATTGTTCAAGTGCTATGCAGTTATAGCACATTGCCTTTGTATTCTTTAGTCACTCAGACGCCCGCACTCACACGAGTGGAAGCAAGCGCACGGGACATGGGTGAGGGTGACACTCATGGGCTCTTCAACGGACTTTTGGAATGGAAAGTGAAGACACTCGAAGTGAGAGGAGCAAGATACGTTTGTGGAAGAGGTAGGAGGATTCTATTCATCAGGGAACTACGATATCTCAAGGTTGCGTTTGCGAAGCAGTTTCATGGATCAATCACAGAGACAGATTACATTTATCTTCGACAAGCCTTTATTAAGATGCTTTTTCTAATGGGGGCAAAGTTGGAATACATAATAACACGTATGGCTCAAGAATTAAACTCTAGAGTAGAAGACAAAGAAGCACAACAAGAACAAGTACATGACAACATTAATAGATTTCATAGACAACATAAGGAAATCAAAAAACATGGTGGCCACCATGCAGTGAATCCCTCAGATGAACTCTTTTGGTTTGCTCGTCCTTCTTTTGTTCTTGTCTTGATTCGTTTCATTCTGTTTCAAAATTCCTTCCAGATTGCCTTCTTATTTTGGATTTGGACGACTTATGGATTTAAGTCATGCATTATGGAGAAACCCGCATTCAACATCACTAAACTCATCTTAGGGTGA 1653 39.56 MDGRGNIVHEPPNAKFEFTPTWIIAVVSSIIVIISFSVERGLHRLGQGKVPLLSLEALHQLHIFIFVLAVVHVIFCATTMLLASAKIRLWKRWENSIHRGTTISQDDNEFKERAEGFWKNAAVIAWMVAFAKQFHGSITKSDYIYLRQGFIKKHCPGEPNFNFYDHITKTYQHDFKKVVGISWYLWAFVVLFLLLNLEGWHTYFWMSFLPLIMLLLVGAKLEYVITRMAQELNSRIEDKEAQQEQVHDNINRFHRQHKEIKRHGSRHVVNPSNEHFWFGRPSLVLVLIHFILFQNSFEIAFFFWIWTTYGFKSCIMDKPAFIITRLILGGIVQVLCSYSTLPLYSLVTQTPALTRVEASARDMGEGDTHGLFNGLLEWKVKTLEVRGARYVCGRGRRILFIRELRYLKVAFAKQFHGSITETDYIYLRQAFIKMLFLMGAKLEYIITRMAQELNSRVEDKEAQQEQVHDNINRFHRQHKEIKKHGGHHAVNPSDELFWFARPSFVLVLIRFILFQNSFQIAFLFWIWTTYGFKSCIMEKPAFNITKLILG 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 374512 388116 - CcPI632755_02g000290.1 Cco02g0029 170786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0029 550 Coils Coil 450 470 - -
Cco02g0029 550 Coils Coil 229 249 - -
Cco02g0029 550 Pfam Mlo family 47 350 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cco02g0029 550 Pfam Mlo family 486 550 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cco02g0029 550 PANTHER MLO-LIKE PROTEIN 1 48 350 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0029 K08472 - - csv:101216903 512.686
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0029 Cco-Chr2:374512 Cco06g0054 Cco-Chr6:519452 5.20E-87 dispersed
Cco02g0029 Cco-Chr2:374512 Cco02g2253 Cco-Chr2:35108370 3.10E-63 transposed
Cco02g0029 Cco-Chr2:374512 Cco03g0237 Cco-Chr3:2541930 3.10E-63 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g2082 . 3 553 MLO family AT5G53760 69.6 3.8e-218 754.6
Cco11g1866 . 5 530 MLO family AT5G53760 67.4 4.0e-207 718.0
Cco05g1118 . 7 466 MLO family AT5G53760 51.3 3.1e-127 452.6
Cco09g2082 . 3 553 MLO family AT1G26700 68.3 1.8e-212 735.7
Cco11g1866 . 1 511 MLO family AT1G26700 66.7 4.1e-201 698.0
Cco03g0237 . 8 536 MLO family AT2G39200 63.9 2.1e-192 669.1
Cco05g2351 . 7 499 MLO family AT2G39200 67.7 1.4e-191 666.4
Cco02g2253 . 8 505 MLO family AT2G39200 67.1 1.5e-190 662.9
Cco02g2253 . 1 416 MLO family AT1G61560 65.9 7.7e-160 560.5
Cco03g0237 . 1 416 MLO family AT1G61560 66.3 4.7e-157 551.2
Cco05g2351 . 7 408 MLO family AT1G61560 65.2 1.6e-152 536.2
Cco04g1876 . 28 422 MLO family AT1G61560 52.2 2.0e-115 412.9
Cco04g1876 . 18 490 MLO family AT2G17430 63.4 1.8e-172 602.8
Cco10g0012 . 29 490 MLO family AT2G17430 63.4 1.6e-160 563.1
Cco08g1081 . 4 451 MLO family AT2G17430 54.4 3.1e-132 469.2
Cco04g1876 . 7 567 MLO family AT2G17480 63.4 1.1e-196 683.3
Cco10g0012 . 5 574 MLO family AT2G17480 58.6 4.5e-177 618.2
Cco08g1081 . 11 436 MLO family AT2G17480 59.5 4.7e-142 501.9
Cco02g2253 . 8 463 MLO family AT2G17480 50.3 3.3e-124 442.6
Cco08g1081 . 1 366 MLO family AT1G42560 59.6 8.7e-126 447.2
Cco04g1876 . 28 386 MLO family AT1G42560 58.7 1.4e-120 429.9
Cco10g0012 . 29 388 MLO family AT1G42560 56.5 2.1e-111 399.4
Cco06g0054 . 6 419 MLO family AT4G24250 54.2 6.0e-117 417.9
Cco02g0029 . 43 329 MLO family AT4G24250 51.8 3.8e-79 292.4
Cco04g1876 . 8 387 MLO family AT5G65970 66.8 8.1e-145 510.8
Cco10g0012 . 28 388 MLO family AT5G65970 66.2 4.0e-136 481.9
Cco08g1081 . 7 364 MLO family AT5G65970 56.9 2.5e-114 409.5
Cco02g2253 . 2 381 MLO family AT5G65970 51.8 7.4e-106 381.3
Cco03g0237 . 2 381 MLO family AT5G65970 50.7 1.4e-101 367.1
Cco08g1081 . 2 513 MLO family AT2G33670 57.6 1.2e-159 560.1
Cco04g1876 . 28 470 MLO family AT2G33670 62.3 6.7e-158 554.3
Cco10g0012 . 29 471 MLO family AT2G33670 58.7 9.7e-141 497.3
Cco05g2351 . 64 525 MLO family AT1G11310 63.9 1.7e-169 592.8
Cco03g0237 . 63 506 MLO family AT1G11310 64.9 7.5e-165 577.4
Cco02g2253 . 63 520 MLO family AT1G11310 62.7 9.2e-163 570.5
Cco06g0054 . 5 501 MLO family AT2G44110 59.5 1.9e-165 579.3
Cco06g0054 . 1 508 MLO family AT4G02600 72.7 2.6e-213 738.4
Cco05g1118 . 3 560 MLO family AT1G11000 67.3 9.8e-214 740.0
Cco10g0068 . 1 495 MLO family AT1G11000 51.5 1.0e-130 464.2
Cco06g0054 . 1 508 MLO family AT4G02600 72.7 2.6e-213 738.4
Cco05g2351 . 64 525 MLO family AT1G11310 63.9 1.7e-169 592.8
Cco03g0237 . 63 506 MLO family AT1G11310 64.9 7.5e-165 577.4
Cco02g2253 . 63 520 MLO family AT1G11310 62.7 9.2e-163 570.5
Cco05g1118 . 3 560 MLO family AT1G11000 67.3 9.8e-214 740.0
Cco10g0068 . 1 495 MLO family AT1G11000 51.5 1.0e-130 464.2
Cco08g1081 . 2 513 MLO family AT2G33670 57.6 1.2e-159 560.1
Cco04g1876 . 28 470 MLO family AT2G33670 62.3 6.7e-158 554.3
Cco10g0012 . 29 471 MLO family AT2G33670 58.7 9.7e-141 497.3
Cco02g2253 . 1 416 MLO family AT1G61560 65.9 7.7e-160 560.5
Cco03g0237 . 1 416 MLO family AT1G61560 66.3 4.7e-157 551.2
Cco05g2351 . 7 408 MLO family AT1G61560 65.2 1.6e-152 536.2
Cco04g1876 . 28 422 MLO family AT1G61560 52.2 2.0e-115 412.9
Cco04g1876 . 18 490 MLO family AT2G17430 63.4 1.8e-172 602.8
Cco10g0012 . 29 490 MLO family AT2G17430 63.4 1.6e-160 563.1
Cco08g1081 . 4 451 MLO family AT2G17430 54.4 3.1e-132 469.2
Cco04g1876 . 7 567 MLO family AT2G17480 63.4 1.1e-196 683.3
Cco10g0012 . 5 574 MLO family AT2G17480 58.6 4.5e-177 618.2
Cco08g1081 . 11 436 MLO family AT2G17480 59.5 4.7e-142 501.9
Cco02g2253 . 8 463 MLO family AT2G17480 50.3 3.3e-124 442.6
Cco08g1081 . 1 366 MLO family AT1G42560 59.6 8.7e-126 447.2
Cco04g1876 . 28 386 MLO family AT1G42560 58.7 1.4e-120 429.9
Cco10g0012 . 29 388 MLO family AT1G42560 56.5 2.1e-111 399.4
Cco04g1876 . 8 387 MLO family AT5G65970 66.8 8.1e-145 510.8
Cco10g0012 . 28 388 MLO family AT5G65970 66.2 4.0e-136 481.9
Cco08g1081 . 7 364 MLO family AT5G65970 56.9 2.5e-114 409.5
Cco02g2253 . 2 381 MLO family AT5G65970 51.8 7.4e-106 381.3
Cco03g0237 . 2 381 MLO family AT5G65970 50.7 1.4e-101 367.1
Cco09g2082 . 3 553 MLO family AT5G53760 69.6 3.8e-218 754.6
Cco11g1866 . 5 530 MLO family AT5G53760 67.4 4.0e-207 718.0
Cco05g1118 . 7 466 MLO family AT5G53760 51.3 3.1e-127 452.6
Cco03g0237 . 8 536 MLO family AT2G39200 63.9 2.1e-192 669.1
Cco05g2351 . 7 499 MLO family AT2G39200 67.7 1.4e-191 666.4
Cco02g2253 . 8 505 MLO family AT2G39200 67.1 1.5e-190 662.9
Cco06g0054 . 6 419 MLO family AT4G24250 54.2 6.0e-117 417.9
Cco02g0029 . 43 329 MLO family AT4G24250 51.8 3.8e-79 292.4
Cco09g2082 . 3 553 MLO family AT1G26700 68.3 1.8e-212 735.7
Cco11g1866 . 1 511 MLO family AT1G26700 66.7 4.1e-201 698.0
Cco06g0054 . 5 501 MLO family AT2G44110 59.5 1.9e-165 579.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000916 3 4 3 1 3 3 3 2 3 2 4 3 3 3 2 3 3 6 3 2 2 2 1 2 2 2 3 6 5 2 86