Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0051 ATGGATGCAGAACCTTCGATAACCAATGGCACAGATGATACAATCGTCTGCTACGCGCCCACCATGATTACTACAAATGGGGTGTGGCAAGGAGACAACCCTCTGGATTATTCTCTTCCTCTCTTCATTTTGCAGTTAACAATGGTGGTTTTGATGACTCGCGCTTTGGTTTTCCTCTTAAAACCATTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGGGTGATTTTGGGGCCTTCGGTACTAGGGAGAAGTGCTAAATTTGCCAACACCGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAATGTGGGGCTTCTCTACTTTCTATTCTTGGTTGGTGTGGAGATGGATCTATCAGTGATTCGTCGAACAGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCGTTCGGAATAGGAGCTGCCTTTTCATTCCAGTTGCACAAAGCAGATCAGAAATTGAACTACAACACTTACGTTATGTTTCTTGGTATTGCGCTCTCCGTGACAGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTGATAAATTCAGAGCTTGGAAGGATGGCCATGGCAGCTGCCCTTTTCAATGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCTGAGAATGACTCCTCATCCTTGGCTTCTTTATGGGTTGTATTGTCAAGTGTAGGCTTTGTTTTGTTCTGCATCTTCATCGTTAGACCGACGATCTCGTGGATGATTCGAAAAACTCCAGAAGGGGAAAGTGTGAGTGAGTTCTACATTTGTTTGATTCTCACAGGGGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCCGTGTTTGGGGCTTTTGTGTTTGGCTTAGTTATCCCAAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTCTGCTCCCTCTTTTCTTTGCAATAAGTGGGCTTAAGACTAATGTGGCTAGCATAGAAGGATTAATCTCTTGGGTATCTATTCTATTTATAACTCTCCTTGCTTTTATTGGCAAAATCATTGGAACTCTTCTTGCTTCCATTTGTTATCAAATGTCCTATCGGGAAGGTGTCACATTAGGCTTGCTTATGAACACCAAGGGCCTTATTGAAATGATCATCCTCAATGTCGGAAAGGACCAAAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTAGCCCTCGTTATGACCGGGATAATAACACCTGTAGTTACAATAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGCATCAAAGCCAGATTCAGAGTTCAGAGTTTTAGTTTGTATACACACACCTCGAAATGTGCCAACTATCATCCATCTCCTTGATGCCTCCCATCCAACCAAAAGATCCCCAATTTGCATTTATGTGCTACACTTGGTCGAACTCACAGGTCGAGCCTCAGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGTCCTGCTTTAAATCGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAACAACACGTCGATTGCGTCTCTGTTCAACCCCTCACAGCCATTTCCCCTTACTCGACAATGCACGAAGACATATGCAATTTAGCCGAGGATAAACGGGTTGCCCTCATAATCATCCCATTCCATAAGCAACAAACAGTTGATGGAGGAATGGAAGCCACAAATCCAGCATTTAGATTGGTTAACCAAAATGTGTTAGCCAATGCCCCTTGCTCCGTCGGAATTCTAGTCGATCGAGGCTTAAACAGCTCGAATCGAGTCGCTTCAAACAAGGCAACTCATTATAACATAATCACGTTGTTCTTTGGTGGACAAGATGATAGAGAAGCCTTATCATACGCATGGAGAATGTCAGAACATCCAGGAGTGAGCTTAACCGTAATGCGATTCATCGCTGCACAAGAAATAATTGAACGAAAACCAGAAGAGGACGCACCAATCGTTTCAGCAACGGAAACAGAAATTAGCAGAGAGAGGAAACTCGATGAAGATTACATAAACGAATTTAGGACAAAGAACCCAAATAGCGAGTCAATTACTTACACAGAGAGAGTGTTGAACAACGGCGAGGAGACAGTGGCGGCCATAAGATCAATGGACGATGCTCACGACCTGTTCATCGTAGGAAGAGGTGAATCTCATGTATCACCTCTCACTGCCGGACTCACAGACTGGAGCGAATGTCCAGAGCTGGGAGCAATCGGTGATTTGTTAGCTTCATCGGATTTTGCAGCGACGACTTCAGTTTTGGTAGTGCAACAGTTCGGAGCAGCAATGGCGGTAGAACATGGAGAAGAAGAAGGTTCACCACGCAACGAAGAACCCATTGATCCCTACCAAAGCCTGAGATCAATGAATTTGAGGCAACATACTCCACCAAGAACTCAAATGATTTATGATACATGA 2511 43.57 MDAEPSITNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVLMTRALVFLLKPFRQPRVISEILGGVILGPSVLGRSAKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKADQKLNYNTYVMFLGIALSVTAFPVLARILAELKLINSELGRMAMAAALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSVGFVLFCIFIVRPTISWMIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVASIEGLISWVSILFITLLAFIGKIIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALVMTGIITPVVTIIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIIHLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVALIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNSSNRVASNKATHYNIITLFFGGQDDREALSYAWRMSEHPGVSLTVMRFIAAQEIIERKPEEDAPIVSATETEISRERKLDEDYINEFRTKNPNSESITYTERVLNNGEETVAAIRSMDDAHDLFIVGRGESHVSPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAMAVEHGEEEGSPRNEEPIDPYQSLRSMNLRQHTPPRTQMIYDT 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 552627 555389 + CcPI632755_02g000510.1 Cco02g0051 170808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0051 836 PANTHER CATION/H + ANTIPORTER 17 790 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Cco02g0051 836 MobiDBLite consensus disorder prediction 796 836 - -
Cco02g0051 836 FunFam Cation/H(+) antiporter 15 41 441 - -
Cco02g0051 836 Pfam Sodium/hydrogen exchanger family 54 431 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cco02g0051 836 MobiDBLite consensus disorder prediction 817 836 - -
Cco02g0051 836 Gene3D - 478 758 - -
Cco02g0051 836 Gene3D - 41 439 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0051 K26731 - - csv:101219265 1508.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0051 Cco-Chr2:552627 Cco07g0811 Cco-Chr7:18399460 2.10E-201 dispersed
Cco02g0051 Cco-Chr2:552627 Cco07g0501 Cco-Chr7:6150026 1.30E-137 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco02g0051 . 4 822 Antiporter Super Family AT2G13620 70.5 0.0e+00 1150.6
Cco07g0811 . 42 816 Antiporter Super Family AT2G13620 50.1 9.7e-207 717.2
Cco07g0810 . 55 712 Antiporter Super Family AT2G13620 52.2 1.0e-187 654.1
Cco04g1032 . 78 848 Antiporter Super Family AT3G53720 69.1 5.1e-290 993.8
Cco07g0811 . 114 813 Antiporter Super Family AT3G53720 50.5 1.7e-181 633.3
Cco07g0814 . 86 771 Antiporter Super Family AT3G53720 50.1 2.5e-180 629.4
Cco07g0810 . 127 722 Antiporter Super Family AT3G53720 52.1 1.7e-168 590.1
Cco07g0814 . 7 774 Antiporter Super Family AT5G41610 68.0 1.8e-298 1021.9
Cco07g0811 . 32 816 Antiporter Super Family AT5G41610 66.7 1.2e-294 1009.2
Cco07g0817 . 39 763 Antiporter Super Family AT5G41610 70.1 1.2e-289 992.6
Cco07g0810 . 45 714 Antiporter Super Family AT5G41610 70.7 1.6e-270 929.1
Cco04g1032 . 10 822 Antiporter Super Family AT5G41610 50.9 6.0e-209 724.5
Cco07g0814 . 11 791 Antiporter Super Family AT4G23700 65.2 5.4e-290 993.8
Cco07g0811 . 41 833 Antiporter Super Family AT4G23700 64.0 7.5e-284 973.4
Cco07g0810 . 55 727 Antiporter Super Family AT4G23700 67.4 2.0e-260 895.6
Cco07g0817 . 39 763 Antiporter Super Family AT4G23700 62.6 7.6e-260 893.6
Cco07g0814 . 7 791 Antiporter Super Family AT3G17630 61.5 1.5e-268 922.5
Cco07g0811 . 39 814 Antiporter Super Family AT3G17630 62.3 2.5e-268 921.8
Cco07g0817 . 39 763 Antiporter Super Family AT3G17630 63.9 1.2e-254 876.3
Cco07g0810 . 51 712 Antiporter Super Family AT3G17630 65.6 3.9e-245 844.7
Cco04g1032 . 10 824 Antiporter Super Family AT3G17630 51.6 5.6e-207 718.0
Cco07g0814 . 1 775 Antiporter Super Family AT1G64170 58.1 1.7e-240 829.3
Cco07g0811 . 42 816 Antiporter Super Family AT1G64170 57.6 2.5e-239 825.5
Cco07g0817 . 39 766 Antiporter Super Family AT1G64170 55.6 6.2e-214 741.1
Cco07g0810 . 56 709 Antiporter Super Family AT1G64170 60.1 6.0e-209 724.5
Cco02g0051 . 4 822 Antiporter Super Family AT2G13620 70.5 0.0e+00 1150.6
Cco07g0811 . 42 816 Antiporter Super Family AT2G13620 50.1 9.7e-207 717.2
Cco07g0810 . 55 712 Antiporter Super Family AT2G13620 52.2 1.0e-187 654.1
Cco07g0814 . 1 775 Antiporter Super Family AT1G64170 58.1 1.7e-240 829.3
Cco07g0811 . 42 816 Antiporter Super Family AT1G64170 57.6 2.5e-239 825.5
Cco07g0817 . 39 766 Antiporter Super Family AT1G64170 55.6 6.2e-214 741.1
Cco07g0810 . 56 709 Antiporter Super Family AT1G64170 60.1 6.0e-209 724.5
Cco07g0814 . 11 791 Antiporter Super Family AT4G23700 65.2 5.4e-290 993.8
Cco07g0811 . 41 833 Antiporter Super Family AT4G23700 64.0 7.5e-284 973.4
Cco07g0810 . 55 727 Antiporter Super Family AT4G23700 67.4 2.0e-260 895.6
Cco07g0817 . 39 763 Antiporter Super Family AT4G23700 62.6 7.6e-260 893.6
Cco07g0814 . 7 774 Antiporter Super Family AT5G41610 68.0 1.8e-298 1021.9
Cco07g0811 . 32 816 Antiporter Super Family AT5G41610 66.7 1.2e-294 1009.2
Cco07g0817 . 39 763 Antiporter Super Family AT5G41610 70.1 1.2e-289 992.6
Cco07g0810 . 45 714 Antiporter Super Family AT5G41610 70.7 1.6e-270 929.1
Cco04g1032 . 10 822 Antiporter Super Family AT5G41610 50.9 6.0e-209 724.5
Cco07g0814 . 7 791 Antiporter Super Family AT3G17630 61.5 1.5e-268 922.5
Cco07g0811 . 39 814 Antiporter Super Family AT3G17630 62.3 2.5e-268 921.8
Cco07g0817 . 39 763 Antiporter Super Family AT3G17630 63.9 1.2e-254 876.3
Cco07g0810 . 51 712 Antiporter Super Family AT3G17630 65.6 3.9e-245 844.7
Cco04g1032 . 10 824 Antiporter Super Family AT3G17630 51.6 5.6e-207 718.0
Cco04g1032 . 78 848 Antiporter Super Family AT3G53720 69.1 5.1e-290 993.8
Cco07g0811 . 114 813 Antiporter Super Family AT3G53720 50.5 1.7e-181 633.3
Cco07g0814 . 86 771 Antiporter Super Family AT3G53720 50.1 2.5e-180 629.4
Cco07g0810 . 127 722 Antiporter Super Family AT3G53720 52.1 1.7e-168 590.1
Cco09g0384 . 47 790 Antiporter Super Family AT3G52080 54.3 9.1e-234 807.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39