Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0058 ATGCTCCCCAGAAAACCCCCATTCCCTTTCCCCATTTCCAAATCCACTCTCCTCTTCCTCTCCATGGCTTCCCTCTCCTTCCTCTCTTTCCTCTCCCTCTTCTTCTTCTTTCTCTCTCTCTCCTCCTCCTCCTCCTCTGCCGCTCGCCATCGCCACCACCACCTCCCAACCCATTTCACCAACCCCCCTTCCACCGACGACGTCATCCTTCACGCCTGCAAGGCCACCCGTTTTCCCGATCAATGCGGATCTTCCCTCTCTCACTCCTCCTCTCTCCCTCCCAATCCTACCCCTCTCCAGATCCTCCAATCCGCCGTCGCCCTCTCATCCGACGGTTTAGCCACTGCTCAATCCATGGTTAACCAGATTCTCGATTCCTCCGCCAAGAATGTCAATCGGACGACCGCTGCCAACAACTGCCTTGAGGTACTGCGGAATTCCGATTACCGTATTTCTCTCACCAACGACGCTCTCCGCCGTGGTCGGACCAAGGACGCCCGCGCCTGGCTGAGTGCGTCCCTACTTTACCATTACGATTGCTGGTCTGCGCTCAAGTACGCTAACGACACTCAATTGGTTGACAAAACCATGGCGTTTCTCGATTCTCTAATTGGTCTCTCCAGCAACGCGCTGAGTATGTTGGTGGCTTACGACATTTCCGGCAACGATACGGCGGCGTGGACGCCGCCGAGGACGGAGCGGGATGGGTTTTGGGAAGGCGGTGGTGGCGGATCTGGGTTGGGGTTTAGCGGTGGGTTTCCGTCGAAGGTGGCGGCTGATGCGACGGTGTGCAAGGATGGCGCTGGGGGATGTCATAAAACTGTTCAGGAAGCTGTTAACGCGGCGCCGGAGAATGCGGCGGCGCGTAGGTTTGTGATTCATATTAAGGAAGGTGTTTATGAGGAAATCGTGAGGGTTCCGCTAGAGAAGAAGAATGTGGTGTTTTTAGGAGATGGGATGGGCAAAACGGTCATTACGGGCTCACTTAATGTGGGCCAGCCTGGGATTTCCACTTACAACACCGCCACCGTTGGAGTACTCGGTGATGGATTCATGGCTAGTGGTCTCACCATTCAAAACACAGCAGGGCCAGATGCTCATCAAGCTGTGGCTTTTAGATCAGATAGTGATCTCTCAGTCATTCAAGATTGTGAGTTTCTAGGCAATCAAGACACTCTCTATGCTCACTCTCTTCGCCAATTCTATAAATCTTGTAAGATTCAAGGCAATGTAGATTTCATCTTTGGAAACTCAGCTTCCATCTTCCAAGACTGCGAGATCCTAGTTCGCCCCAGACAGCTCAAGCCTGAGAAAGGTGAAAACAACGCCATCACTGCTCAGGGCAGGACCGACCCTGCTCAAGCGACAGGTTTCGTATTCCAAAACTGCCTCATAAATGGCACTCAGGAGTACATGTCATTGTACTACAGCAAGCCTAAAGTGCATAAAAACTACTTGGGAAGACCGTGGAAGGAGTACTCGAGGACAGTTTTTATACATTGTACTCTCGAGGCTCTTGTCACGCCTGCGGGGTGGATGCCATGGAGTGGGGATTTTGCATTGAAGACTCTTTTCTATGGAGAGTTTGAGAATTCGGGAGCAGGGTCGAAGACATCGGAGAGAGTCGGGTGGAGTAGTCAGATTCCAGCACAACATGTTTTTAGTTACTCTGTTCAAAATTTCATTCAGGGAGATGAATGGATTCCTTCATCTCAGTCATCTAATGAACCAGAAATGTTGAACAAGAAAAGTAAAGATGTGAAATTAGATTAG 1773 51.1 MLPRKPPFPFPISKSTLLFLSMASLSFLSFLSLFFFFLSLSSSSSSAARHRHHHLPTHFTNPPSTDDVILHACKATRFPDQCGSSLSHSSSLPPNPTPLQILQSAVALSSDGLATAQSMVNQILDSSAKNVNRTTAANNCLEVLRNSDYRISLTNDALRRGRTKDARAWLSASLLYHYDCWSALKYANDTQLVDKTMAFLDSLIGLSSNALSMLVAYDISGNDTAAWTPPRTERDGFWEGGGGGSGLGFSGGFPSKVAADATVCKDGAGGCHKTVQEAVNAAPENAAARRFVIHIKEGVYEEIVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFLGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASIFQDCEILVRPRQLKPEKGENNAITAQGRTDPAQATGFVFQNCLINGTQEYMSLYYSKPKVHKNYLGRPWKEYSRTVFIHCTLEALVTPAGWMPWSGDFALKTLFYGEFENSGAGSKTSERVGWSSQIPAQHVFSYSVQNFIQGDEWIPSSQSSNEPEMLNKKSKDVKLD 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 611440 613984 + CcPI632755_02g000580.1 Cco02g0058 170815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0058 590 CDD PMEI-like_3 72 213 - -
Cco02g0058 590 NCBIfam pectinesterase inhibitor domain 31 213 IPR006501 GO:0004857(InterPro)
Cco02g0058 590 PANTHER PECTINESTERASE 32 570 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco02g0058 590 FunFam Probable pectinesterase/pectinesterase inhibitor 51 67 216 - -
Cco02g0058 590 Pfam Plant invertase/pectin methylesterase inhibitor 69 213 IPR006501 GO:0004857(InterPro)
Cco02g0058 590 MobiDBLite consensus disorder prediction 568 590 - -
Cco02g0058 590 FunFam Pectinesterase 254 579 - -
Cco02g0058 590 SUPERFAMILY Pectin lyase-like 257 570 IPR011050 -
Cco02g0058 590 Pfam Pectinesterase 260 565 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco02g0058 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 213 IPR035513 -
Cco02g0058 590 Gene3D - 254 577 IPR012334 -
Cco02g0058 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 216 IPR035513 -
Cco02g0058 590 SMART PMEI_2 64 213 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0058 Cco-Chr2:611440 Cco05g0884 Cco-Chr5:7629229 9.80E-84 dispersed
Cco02g0057 Cco-Chr2:605782 Cco02g0058 Cco-Chr2:611440 1.00E-209 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0058 - - - 0.0