Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0067 ATGGTGAAGGCTGGATTTGCCGGTGATGATGCTCCCAGAGCAGTGTTTCCCAGTATTGTTGGTCGACCTCGACACACTGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTACGTTGGTGACGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCAGTGCTTCTTACCGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTTAATGTACCTGCCATGTATGTTGCCATCCAGGCCGTTCTATCTCTGTATGCCAGTGGTCGTACAACAGGTATTGTGCTCGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGCTGGTCGTGATCTAACTGATGCTTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTCCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTATGAGCAGGAACTGGAGACTGCTAAGAGTAGCTCCTCAATTGAGAAGAACTATGAACTGCCCGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGCCCCGAAGTTCTTTTCCAGCCATCCCTCATTGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCAATTATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGAAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATCGCTGACCGTATGAGCAAAGAGATCACAGCTCTTGCTCCGAGCAGCATGAAAATCAAGGTCGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGATCAATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCAAAGGGCGAGTACGACGAATCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA 1083 46.91 MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 714053 715443 + CcPI632755_02g000670.1 Cco02g0067 170824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0067 360 PANTHER ACTIN 4 352 IPR004000 -
Cco02g0067 360 Gene3D Actin; Chain A, domain 4 165 256 - -
Cco02g0067 360 SMART actin_3 1 360 IPR004000 -
Cco02g0067 360 FunFam Actin, alpha skeletal muscle 1 169 - -
Cco02g0067 360 FunFam Major actin 243 323 - -
Cco02g0067 360 ProSitePatterns Actins signature 2. 341 349 IPR004001 -
Cco02g0067 360 Gene3D - 1 354 - -
Cco02g0067 360 Pfam Actin 1 360 IPR004000 -
Cco02g0067 360 FunFam Actin, muscle 165 256 - -
Cco02g0067 360 ProSitePatterns Actins signature 1. 38 48 IPR004001 -
Cco02g0067 360 CDD NBD_sugar-kinase_HSP70_actin 59 166 - -
Cco02g0067 360 Gene3D - 123 323 - -
Cco02g0067 360 SUPERFAMILY Actin-like ATPase domain 131 360 IPR043129 -
Cco02g0067 360 PRINTS Actin signature 34 45 IPR004000 -
Cco02g0067 360 PRINTS Actin signature 100 113 IPR004000 -
Cco02g0067 360 PRINTS Actin signature 221 237 IPR004000 -
Cco02g0067 360 PRINTS Actin signature 11 20 IPR004000 -
Cco02g0067 360 PRINTS Actin signature 125 144 IPR004000 -
Cco02g0067 360 PRINTS Actin signature 46 68 IPR004000 -
Cco02g0067 360 FunFam Putative actin-related protein 5 324 352 - -
Cco02g0067 360 ProSitePatterns Actins and actin-related proteins signature. 89 101 IPR020902 -
Cco02g0067 360 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0067 Cco-Chr2:714053 Cco04g1010 Cco-Chr4:25717641 6.80E-205 dispersed
Cco02g0067 Cco-Chr2:714053 Cco04g1320 Cco-Chr4:28536646 7.80E-209 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0067 K10355 - csv:101215469 722.62