Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0067 ATGGTGAAGGCTGGATTTGCCGGTGATGATGCTCCCAGAGCAGTGTTTCCCAGTATTGTTGGTCGACCTCGACACACTGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTACGTTGGTGACGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCAGTGCTTCTTACCGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTTAATGTACCTGCCATGTATGTTGCCATCCAGGCCGTTCTATCTCTGTATGCCAGTGGTCGTACAACAGGTATTGTGCTCGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGCTGGTCGTGATCTAACTGATGCTTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTCCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTATGAGCAGGAACTGGAGACTGCTAAGAGTAGCTCCTCAATTGAGAAGAACTATGAACTGCCCGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGCCCCGAAGTTCTTTTCCAGCCATCCCTCATTGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCAATTATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGAAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATCGCTGACCGTATGAGCAAAGAGATCACAGCTCTTGCTCCGAGCAGCATGAAAATCAAGGTCGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGATCAATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCAAAGGGCGAGTACGACGAATCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA 1083 46.91 MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 714053 715443 + CcPI632755_02g000670.1 Cco02g0067 170824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0067 360 PANTHER ACTIN 4 352 IPR004000 -
Cco02g0067 360 Gene3D Actin; Chain A, domain 4 165 256 - -
Cco02g0067 360 SMART actin_3 1 360 IPR004000 -
Cco02g0067 360 FunFam Actin, alpha skeletal muscle 1 169 - -
Cco02g0067 360 FunFam Major actin 243 323 - -
Cco02g0067 360 ProSitePatterns Actins signature 2. 341 349 IPR004001 -
Cco02g0067 360 Gene3D - 1 354 - -
Cco02g0067 360 Pfam Actin 1 360 IPR004000 -
Cco02g0067 360 FunFam Actin, muscle 165 256 - -
Cco02g0067 360 ProSitePatterns Actins signature 1. 38 48 IPR004001 -
Cco02g0067 360 CDD NBD_sugar-kinase_HSP70_actin 59 166 - -
Cco02g0067 360 Gene3D - 123 323 - -
Cco02g0067 360 SUPERFAMILY Actin-like ATPase domain 131 360 IPR043129 -
Cco02g0067 360 PRINTS Actin signature 34 45 IPR004000 -
Cco02g0067 360 PRINTS Actin signature 100 113 IPR004000 -
Cco02g0067 360 PRINTS Actin signature 221 237 IPR004000 -
Cco02g0067 360 PRINTS Actin signature 11 20 IPR004000 -
Cco02g0067 360 PRINTS Actin signature 125 144 IPR004000 -
Cco02g0067 360 PRINTS Actin signature 46 68 IPR004000 -
Cco02g0067 360 FunFam Putative actin-related protein 5 324 352 - -
Cco02g0067 360 ProSitePatterns Actins and actin-related proteins signature. 89 101 IPR020902 -
Cco02g0067 360 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0067 K10355 - - csv:101215469 722.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0067 Cco-Chr2:714053 Cco04g1010 Cco-Chr4:25717641 6.80E-205 dispersed
Cco02g0067 Cco-Chr2:714053 Cco04g1320 Cco-Chr4:28536646 7.80E-209 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1241 . . . . . . . . Cmo02g00620 Cmo20g01080 Cma03g01077 Cma07g00783 Car03g00968 Car07g00770 Sed01g0035 Cpe19g00544 Cpe10g00351 Bhi03g01386 Tan03g1337 Cmetu11g0408 . Hepe04g1131 . . Cla01g01535 Cam01g1604 Cec04g1251 Cco04g1322 Clacu01g1630 Cmu01g1517 Cre04g1195 . . . . Lsi01g01130 . . Cme08g01062 . Blo06g00212 . . . Bpe06g00278 . . . . Cmo07g00807 . Cma20g01073 . . . Cpe16g00072 Bhi10g02339 Tan07g0883 . . Hepe08g1258 . . Cla02g00072 Cam02g0073 Cec02g0074 Cco02g0067 Clacu02g0071 Cmu02g0070 Cre02g0410 Lsi10g00709 Csa06g02804 Chy02g01031 Cme11g00076
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.5e-213 738.0
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT5G59370 97.1 6.5e-214 740.0
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-213 738.4
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.1e-213 736.5
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT5G59370 93.9 8.7e-211 729.6
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.3e-200 693.7
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.0e-214 742.7
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.4e-214 739.6
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 5.8e-215 743.4
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.8e-214 740.7
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.3e-213 736.1
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.0e-208 719.5
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.6e-210 726.1
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 6.3e-209 723.4
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT1G49240 92.6 6.3e-209 723.4
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.1e-217 749.6
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT5G09810 96.6 6.5e-214 740.0
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.2e-213 737.3
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-212 734.2
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.7e-57 216.5
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT2G19760 72.5 1.2e-53 206.1
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT2G19760 76.9 7.9e-50 193.4
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT4G29350 70.2 2.4e-51 198.4
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT4G29350 76.9 1.1e-48 189.5
Cco11g0227 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.7e-38 153.7
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT4G29340 72.4 4.1e-54 207.6
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT4G29340 65.8 3.0e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276