Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0069 ATGCTGGAAATTTCGCCTTCGCCGGAAAACTCTACCGCCGCCGCCGCTGCCGTCGTGAACCGGGCCGCCGAGGAAGACGGTGCAGCAGCCTCTGCCGGATTTTCGGAGGAGGCTGACCGGAACTGGCCCGGTAATCGGTGGCCGCGAGAGGAGACTATGGCTTTGCTGAAGGTTCGGTCGAGTATGGATACTGCGTTTAGGGATGCAAGTTTGAAAGCTCCTCTATGGGAAGAAGTTTCCAGGAAATTGGCTGAGCTTGGGTATAATCGAAGTGCGAAAAAATGCAAAGAGAAGTTTGAGAACATTTATAAGTATCACAAAAGGACTAAAGATGGAAGATCAGGGAAAGCGAATGGGAAAAATTATAGGTATTTTGAGCAATTAGAAGCTCTAGATAATAATCCATTGCTTCCCTCTCAAGCTGATTCAATGGAAGAAATCCCAAGGATTATCCCAAACAATGTTGTTCACAATGCAATTCCATGTTCCGTAGTAAACCCGGGTGCAAATTTTGTTGAAACTACCACCACTTCAATATCGACGTCGACCACGTCTTGTTCGAGTAAAGAATTGGGTGGGACGAGGAAGAAGAAGAGGAAGTTTGTGGAGTTCTTTGAGAGGTTAATGAACGAGGTGATTGAGAAGCAGGAGAAATTGCAAAAGAAGTTTGTGGAGGCATTGGAGAAATGTGAAGTAGAGAGGTTAGCTAGAGAAGAAGAATGGAAGGTGCAAGAATTAGCTCGAATCAAGAAAGAGCGAGAACGTTTAAATCAAGAGAGATCGATTGCAGCTGCAAAGGATGCAGCTGTTCTTTCATTCTTGAAGGTTTTCTCTGAACAAGTGGGCACAGTGCAGTTCCCTGAGAACTTAGTGCAGTTCCCTGAGAACTTGATTTCAATGGAGAATTTGACTGAGAAGCAAGATGATGGTAATGTTGACAGAAATACAAGCACTCAAGAGAATATCAACAATGGTAATTCGAATCAGATTAGCTCGTCCCGATGGCCGAAAGAAGAGATCGATGCTCTGATTCAGCTAAGGACTAATCTGCAGATGAAGTACCAAGATAATGGCCCTAAAGGTCCTCTCTGGGAGGAAATATCATTAGCCATGAAGAAACTTGGGTATGATAGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAAAACATCAACAAATACTTCAAAAGAGTAAAGGAAAGCAACAAAAAGCGACCTGAGGATTCAAAGACATGTCCTTATTTCCAGCAGCTTGATGCATTGTACAAACAGAAATCCAAGAAAGTTGTCAACAATCCAGCTAATCCAAATTACGAACTAAAACCCGAGGAACTATTGATGCACATGATGGGCGGCCAAGAAGAAGGCCACCAACCTGAATCAGCAACAGACGACGGTGAAGCTGAGAATGCCGATCAGAACCAAGAAGACGAAGATGAAGACGAAGATTATCAGATTGTGGCCAACAACAACAGTAATCAAATGGAAGTTAACTAG 1494 43.71 MLEISPSPENSTAAAAAVVNRAAEEDGAAASAGFSEEADRNWPGNRWPREETMALLKVRSSMDTAFRDASLKAPLWEEVSRKLAELGYNRSAKKCKEKFENIYKYHKRTKDGRSGKANGKNYRYFEQLEALDNNPLLPSQADSMEEIPRIIPNNVVHNAIPCSVVNPGANFVETTTTSISTSTTSCSSKELGGTRKKKRKFVEFFERLMNEVIEKQEKLQKKFVEALEKCEVERLAREEEWKVQELARIKKERERLNQERSIAAAKDAAVLSFLKVFSEQVGTVQFPENLVQFPENLISMENLTEKQDDGNVDRNTSTQENINNGNSNQISSSRWPKEEIDALIQLRTNLQMKYQDNGPKGPLWEEISLAMKKLGYDRSAKRCKEKWENINKYFKRVKESNKKRPEDSKTCPYFQQLDALYKQKSKKVVNNPANPNYELKPEELLMHMMGGQEEGHQPESATDDGEAENADQNQEDEDEDEDYQIVANNNSNQMEVN 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 731057 732813 + CcPI632755_02g000690.1 Cco02g0069 170826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0069 497 Coils Coil 202 229 - -
Cco02g0069 497 CDD GT1 333 398 - -
Cco02g0069 497 PANTHER FI21293P1 37 472 - -
Cco02g0069 497 Pfam Myb/SANT-like DNA-binding domain 45 131 IPR044822 -
Cco02g0069 497 Pfam Myb/SANT-like DNA-binding domain 333 420 IPR044822 -
Cco02g0069 497 FunFam Trihelix transcription factor GT-2 47 108 - -
Cco02g0069 497 ProSiteProfiles Myb-like domain profile. 45 103 IPR001005 -
Cco02g0069 497 Coils Coil 246 266 - -
Cco02g0069 497 SMART sant 43 105 IPR001005 -
Cco02g0069 497 SMART sant 331 393 IPR001005 -
Cco02g0069 497 Gene3D - 47 108 - -
Cco02g0069 497 Gene3D - 335 396 - -
Cco02g0069 497 ProSiteProfiles Myb-like domain profile. 327 391 IPR001005 -
Cco02g0069 497 MobiDBLite consensus disorder prediction 448 497 - -
Cco02g0069 497 MobiDBLite consensus disorder prediction 314 333 - -
Cco02g0069 497 MobiDBLite consensus disorder prediction 305 333 - -
Cco02g0069 497 MobiDBLite consensus disorder prediction 464 484 - -
Cco02g0069 497 CDD GT1 45 110 - -
Cco02g0069 497 FunFam Trihelix transcription factor GT-2 335 396 - -
Cco02g0069 497 MobiDBLite consensus disorder prediction 26 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0069 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0069 Cco-Chr2:731057 Cco08g0454 Cco-Chr8:11275473 4.70E-87 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58677 PF13837 Myb_DNA-bind_4 3.90E-22 CL0123 Cco TF