Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0073 ATGAAATATATGAAGATCATGGATGAGAATAAAAGAGCTTTCATGGCTGTGATTCTGATTCAAACCATTTACGCCGGCATGTTTCTCCTCTCGAAGGCTGCGTTCGATGGCGGAATGAACAACTATATCTTCGTTTTCTATCGCCAAGCCATCGCCACCGTCTTCCTTTCTCCCATAGCCTTCTTTTTCCAATGGAAAGATGCCCCACCTTTGACATTCTTCACCTTCTGCAAAATTTTTATGCTCTCTTTATTTGGGATAGCCATATGTTTAAATCTTTATGGGATTGCTCTTGTGTACACGTCAGCAACATTGGCTGCAGCAACTACAAATTGTCTTCCTGTCATCACCTTCTTCGTGGCTCTCTTACTTAGGATGGAAGTGTTGAGGATGAAATCAATAGCAGGAATTGCAAAGCTAGCAGGAATAATATTGTGCATTGGTGGTGTGGGAATGTTGGCATTTTACAAAGGCCCTCAATTCAATTTGTTTAATAATCATCATCTCTTTTCTATCCATCACCATTCTTCTAATTCTCTTGCATTGCCCAAATCTTGGTTGAAGGGTTGCTTTTTGATGCTATCTGCCAATACCTTATGGGGTATTTGGATTGTTCTTCAGGCATTTGTATTGAAAAGCTATCCATCAAAGCTTCTGTTGACAAATCTTCAATGTTTGTTAAGTTCATTTCAATCATTTGGAATTGCTATTGCAATGGAGAGAGACCCTCAGCAATGGAAACTTGGTTGGAATATTAGGCTTCTTTCAGTTGCATACTGTGGTATCGTGGTAACCGCGGTTACATATTGTCTTCAAGCTTGGGTTATTGAGAAGAAAGGACCAGTTTATTTAGCCATGTCTACACCTTTTGCCCTTATCATTACAACCTTCTTCTCTGCTGTTTTTCTTGGGGAGAGTATCACTCTTGGAAGTACTTTAGGAGGAATGTTGTTGGTGGGAGGGCTTTATTTTGTGCTATGGGGAAAGAGCAAAGAGCAAAAAATAAGTGAAGGATTGAAAGAAGGTAGCAAAGAATGCAACATGCAAGGGAATGAGATCACTAAGTTAGGAAATGAAACTCCAACTTCTTCAGTGGAAAATGTCTGA 1107 39.75 MKYMKIMDENKRAFMAVILIQTIYAGMFLLSKAAFDGGMNNYIFVFYRQAIATVFLSPIAFFFQWKDAPPLTFFTFCKIFMLSLFGIAICLNLYGIALVYTSATLAAATTNCLPVITFFVALLLRMEVLRMKSIAGIAKLAGIILCIGGVGMLAFYKGPQFNLFNNHHLFSIHHHSSNSLALPKSWLKGCFLMLSANTLWGIWIVLQAFVLKSYPSKLLLTNLQCLLSSFQSFGIAIAMERDPQQWKLGWNIRLLSVAYCGIVVTAVTYCLQAWVIEKKGPVYLAMSTPFALIITTFFSAVFLGESITLGSTLGGMLLVGGLYFVLWGKSKEQKISEGLKEGSKECNMQGNEITKLGNETPTSSVENV 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 770456 778239 - CcPI632755_02g000730.1 Cco02g0073 170830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0073 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 157 - -
Cco02g0073 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 331 - -
Cco02g0073 368 PANTHER WAT1-RELATED PROTEIN 15 341 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco02g0073 368 Pfam EamA-like transporter family 14 144 IPR000620 GO:0016020(InterPro)
Cco02g0073 368 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0073 Cco-Chr2:770456 Cco04g1325 Cco-Chr4:28566979 2.20E-89 dispersed
Cco02g0072 Cco-Chr2:758651 Cco02g0073 Cco-Chr2:770456 6.90E-123 tandem
Cco07g1043 Cco-Chr7:23854877 Cco02g0073 Cco-Chr2:770456 2.10E-50 transposed
Cco08g0836 Cco-Chr8:20197648 Cco02g0073 Cco-Chr2:770456 3.90E-83 transposed
Cco02g0073 Cco-Chr2:770456 Cco04g1321 Cco-Chr4:28540817 1.20E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0073 - - - 0.0