Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0076 ATGGCGAAATCCCCAGAAAATGAACATCCTCACAAAGCTTTTGGTTGGGCTGCTCGAGATTCTTCTGGCTTACTCTCCCCTTTTCATTTCTCTCGAAGGGAAAATGGTGATGATGATGTGTCTATCAAAGTCCTTTACTGTGGGGTCTGCCACTCTGATCTGCACATGCTCAAGAATGACTGGGGTTCTACAGATTATCCTGTAGTACCAGGGCATGAGATTGTTGGTGTTGTGACTTCTGTTGGGAAAAATGTGAAGAAATTCAAAGCAGGAGACGAAGTTGGGGTCGGTGTCATAGTTGGATCTTGTAGAAATTGTGAAAACTGCAGACAAGACTTGGAGAGTTACTGCTCCAAGATGGAATATACTTACAATTCTCCTGGAGTTGATGGAACGAAGAATTACGGTGGTTATTCAGATAAGATCGTTGTCGATCAGCATTTTGTTGTGAGATTTCCTAAAAACTTAGCTCTTGATGCTGGTGCTCCACTCCTATGTGCTGGGATTACAGTTTATAGCCCAATGAGACATTTTGGAATGACTGAACCTGGTAAGCATTTGGGTGTGGCTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGTAAGGCATTTGGATTGAAAGTTACTGTCATTAGTACCTCTTCTAGGAAGAAGGAAGAAGCAATCAACAGGCTTGGTGCAGATGCTTTCGTTGTTTCAAGTGATCCCGAACAATTGAAGGCTGCCATGGGAACTATGGATTACATTTTGGACACAATATCTGCTGTTCATCCTCTTGATCCGTTGATTAGTCTGCTAAACCTCAATGGAAAATTTGTCGCTGTTGGTTTACCTAACAAGCCACTTGAACTATCGCTCGGGTGTCTCGTTTCTGGTAGGAGGCTGGTTGCTGGAAGCAACTTTGGAGGACTGAAAGAGACACAAGAGATGTTAGATTTCTGTGGAAAACACAATATTACAGCAGAAATTGAGCTCATTAAGATGGATGCCATTAATTCGGCTATCGAAAGGCTTGGGAAAGCTGATGTTAAATATCGGTTTGTGATCGACATCAGAAACTCTTTCAAATAG 1077 42.62 MAKSPENEHPHKAFGWAARDSSGLLSPFHFSRRENGDDDVSIKVLYCGVCHSDLHMLKNDWGSTDYPVVPGHEIVGVVTSVGKNVKKFKAGDEVGVGVIVGSCRNCENCRQDLESYCSKMEYTYNSPGVDGTKNYGGYSDKIVVDQHFVVRFPKNLALDAGAPLLCAGITVYSPMRHFGMTEPGKHLGVAGLGGLGHVAVKFGKAFGLKVTVISTSSRKKEEAINRLGADAFVVSSDPEQLKAAMGTMDYILDTISAVHPLDPLISLLNLNGKFVAVGLPNKPLELSLGCLVSGRRLVAGSNFGGLKETQEMLDFCGKHNITAEIELIKMDAINSAIERLGKADVKYRFVIDIRNSFK 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 815910 819460 + CcPI632755_02g000760.1 Cco02g0076 170833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0076 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Cco02g0076 358 Gene3D - 167 323 - -
Cco02g0076 358 Pfam Zinc-binding dehydrogenase 194 316 IPR013149 -
Cco02g0076 358 Gene3D - 16 353 - -
Cco02g0076 358 PANTHER ALDEHYDE REDUCTASE 5 356 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Cco02g0076 358 FunFam probable cinnamyl alcohol dehydrogenase 16 174 - -
Cco02g0076 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 321 IPR036291 -
Cco02g0076 358 CDD CAD1 14 352 IPR047109 GO:0016616(InterPro)
Cco02g0076 358 SUPERFAMILY GroES-like 20 185 IPR011032 -
Cco02g0076 358 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491(InterPro)
Cco02g0076 358 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Cco02g0076 358 Pfam Alcohol dehydrogenase GroES-like domain 36 154 IPR013154 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0076 Cco-Chr2:815910 Cco04g1584 Cco-Chr4:31215056 1.10E-143 dispersed
Cco02g0076 Cco-Chr2:815910 Cco02g0077 Cco-Chr2:828367 1.40E-178 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0076 K00083 - csv:101205228 667.922