Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0077 ATGGCAAAATCACCAGAAGATGAACACCCTATCAAGGCTTTCGGATGGGCTGCCCGAGATACATCCGGGTTACTCTCCCCCTTCCATTTCTCTAGAAGGGAAAATCGTGATGATGATGTCAGTATCAAAGTCCTTTACTGTGGGGTTTGCCATTCTGATCTACATTTGCTCAAGAATGATTGGGGTGTCACAAATTATCCAATTGTCCCAGGGCATGAGATTGTCGGTGTTGTGACCTCTGTTGGAAAGAATGTGAAGAAATTCAAAGCGGGCGATCAAGTTGGGGTTGGTGTCATAGTTGGATCTTGCAGAAGTTGTGAAAATTGTGAACAAGACTTGGAGAATTACTGCCCCAAGATGACATATACTTACAACTCACACTCATCTGATGGAGAAAAGACTTATGGTGGTTATTCTGATAAGATCGTTGTTGATCAGCATTTCGTGCTCCGATTTCCTGACAACTTACCCCTTGATGCTGGAGCTCCACTTCTTTGCGCTGGAATCACAATTTATAGCCCTATGAAATACTATGGAATGACTGAATCTGGTAAGCATTTGGGTGTGGTTGGTCTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGTAAGGCATTTGGGTTGAAAGTTACTGTCATTAGTACCTCTCCAAGAAAGAAGGAGGAAGCCATTGACAGGCTGGGTGCCGATGCTTTCGTTGTTTCAAGTGATCCCCCACAATTAAAGGCCGCCATGGGGACGATGGATTACATTATCGACACGGTATCCACTATCCATGCTCTTGCTCCATTGCTTAGTCTGCTAAAACTGAATGGAAAGTTGGTCACTGTGGGTTTACCTAACAAGCCCCTTGAGCTGCCAGTTGCTTCTCTAGTTCTCGGTAGGAGGATGGTTGGTGGAAGCAACTTTGGAGGGCTGAAAGAGACACAAGAGATGCTGGATTTCTGTGCTCAGCACAACATCACAGCAGAGATTGAGCTCATTAAGATGGATGAAATTAACAAGGCTATTGAAAGACTTTCAAAAGCCGATGTTCGATACCGGTTCGTGATAGACATTGCAAACTCCTTGAAATAG 1077 44.48 MAKSPEDEHPIKAFGWAARDTSGLLSPFHFSRRENRDDDVSIKVLYCGVCHSDLHLLKNDWGVTNYPIVPGHEIVGVVTSVGKNVKKFKAGDQVGVGVIVGSCRSCENCEQDLENYCPKMTYTYNSHSSDGEKTYGGYSDKIVVDQHFVLRFPDNLPLDAGAPLLCAGITIYSPMKYYGMTESGKHLGVVGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAIDRLGADAFVVSSDPPQLKAAMGTMDYIIDTVSTIHALAPLLSLLKLNGKLVTVGLPNKPLELPVASLVLGRRMVGGSNFGGLKETQEMLDFCAQHNITAEIELIKMDEINKAIERLSKADVRYRFVIDIANSLK 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 828367 831188 + CcPI632755_02g000770.1 Cco02g0077 170834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0077 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Cco02g0077 358 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491(InterPro)
Cco02g0077 358 FunFam probable cinnamyl alcohol dehydrogenase 16 176 - -
Cco02g0077 358 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Cco02g0077 358 PANTHER ALDEHYDE REDUCTASE 5 356 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Cco02g0077 358 Gene3D - 167 323 - -
Cco02g0077 358 SUPERFAMILY GroES-like 9 199 IPR011032 -
Cco02g0077 358 Gene3D - 16 353 - -
Cco02g0077 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Cco02g0077 358 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Cco02g0077 358 CDD CAD1 14 352 IPR047109 GO:0016616(InterPro)
Cco02g0077 358 Pfam Alcohol dehydrogenase GroES-like domain 37 154 IPR013154 -
Cco02g0077 358 FunFam Putative cinnamyl alcohol dehydrogenase 6 324 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0126 Cco-Chr1:1097201 Cco02g0077 Cco-Chr2:828367 3.90E-104 dispersed
Cco02g0077 Cco-Chr2:828367 Cco04g1584 Cco-Chr4:31215056 1.70E-147 dispersed
Cco02g0076 Cco-Chr2:815910 Cco02g0077 Cco-Chr2:828367 1.40E-178 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0077 K00083 - csv:101205228 601.668