Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0088 ATGAGAAGAACGAGTATGGATGATGTTGACGTGGCCATGATCAAGCATGCTTTAGAACTTCCCTTGCATTGGAGGATGTCAAGAATGGAGGCAACATGGTTCATTGATATATACGAAAGAAAAAAGGATATGAATCCTACTCTTCTTGCAATGGCCAAATTAGATTTTAACATGCTACAATCTACCTATCAAGAAGATCTTAAATATGCATCGAGTTGGTGGACGAGCAGCGGACTAGGGGAAAAGTTGAGCTTTTCAAGAGACAGATTAATGACAAATTTTTTATGGAAAATAGGTGTTGGATTTAAACCTGAGTTCACATATTTTAGAAGAATGGCCACAAAAGTCAATGCATTAATCACAATAATAGATGATATTTATGATGTTTATGGCACATTGAATGAACTTGAGCTCTTTACCAATACTATAGAGAGATGGGATGTTAATGCAATTGACCAGCTTCCTTACTATATGAGAGTGTGCTTCCTTGCTCTTCACAATTCTATCAGTGAGATAGCTTTTCAAGTAGTAAATGACCAAGGAGTTGATGTCATCCAATTCCTTAAAAATGTGTGGATAGTAAAGGAGGAGTTGAAGAACTTAGAGAAAAACAATGACATAGTTCGTTGGTCTTCAACAATTTTACGACTTGCAGACGACCTAGGAACATCATCGGGAATGAACACCCCAAGCTAG 696 37.21 MRRTSMDDVDVAMIKHALELPLHWRMSRMEATWFIDIYERKKDMNPTLLAMAKLDFNMLQSTYQEDLKYASSWWTSSGLGEKLSFSRDRLMTNFLWKIGVGFKPEFTYFRRMATKVNALITIIDDIYDVYGTLNELELFTNTIERWDVNAIDQLPYYMRVCFLALHNSISEIAFQVVNDQGVDVIQFLKNVWIVKEELKNLEKNNDIVRWSSTILRLADDLGTSSGMNTPS 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 964199 968676 - CcPI632755_02g000880.1 Cco02g0088 170845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0088 231 Gene3D - 11 43 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Cco02g0088 231 SUPERFAMILY Terpenoid synthases 45 223 IPR008949 -
Cco02g0088 231 Gene3D Farnesyl Diphosphate Synthase 44 193 IPR008949 -
Cco02g0088 231 Pfam Terpene synthase family, metal binding domain 77 193 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Cco02g0088 231 PANTHER OS04G0344100 PROTEIN-RELATED 12 191 - -
Cco02g0088 231 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 10 44 IPR008930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0088 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0088 Cco-Chr2:964199 Cco10g0275 Cco-Chr10:3121418 8.40E-39 dispersed
Cco02g0087 Cco-Chr2:955034 Cco02g0088 Cco-Chr2:964199 3.50E-81 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1179 . . Bda04g00218 . . . . . . . . Cma07g00388 . Car07g00341 . Cpe19g00894 . . . . . . . . Cla01g02032 Cam01g2138 Cec04g1795 Cco04g1861 Clacu01g2154 Cmu01g2030 Cre04g1705 Cone6ag0020 Cone9ag0019 Cone14ag1210 Cone15ag1229 Lsi01g00537 . . Cme08g00989 Blo05g00679 . . . . Bpe06g00157 . . . . Cmo07g00382 . . . . . . Bhi10g02361 . . . . . . Cla02g00088 Cam02g0095 Cec02g0096 Cco02g0088 Clacu02g0092 Cmu02g0087 Cre02g0426 Lsi10g00685 Csa06g03394 Chy02g00512 Cme11g00099
Vvi12g505 . . . Bda13g00647 . . . . . . . . . . . . . . . . . . . . Cla02g00088 Cam02g0095 Cec02g0096 Cco02g0088 Clacu02g0092 Cmu02g0087 Cre02g0426 Cone3ag1386 Cone10ag1319 . . . . Chy11g01082 . . . . . Bpe14g00673 . Bma02g01357 Bma12g00758 Sed01g0684 . . . . . . Cpe16g00475 . Bhi10g01174 Tan05g0809 Cmetu01g1616 . Hepe08g0514 . . . . . . . . . . Csa06g01049 . Cme11g01081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000137 1 8 0 1 1 7 0 6 4 10 5 6 7 12 9 17 5 9 1 4 8 13 11 8 9 6 7 10 13 4 202