Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0098 | ATGGGTTCTAAATCCCAAGTCCTATTGAACCCACAAGCTTTGTTTGAAGATCATCAAGATCATGAAGTGGCAGCAAATTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACTTAACTTTTTTCCAACTTCCTTCAATTCCTCAAACCCATTCTCCTTCCCCTCCATTTGATCCTCCAAATTTCTCCATTTCTAGTAATAATACTACTAATAATAATAATAATAGTAATTCCAATCTCAATGAAACCCTACTTTCTTCTTCTCTTTTGCCCCTCAAGCCCTCCCTTTCCTATGAATTTGCACCTCAACACCTCCTTTCCTTGCAAACATCCACTCCAAATCTATGGCCATGGGGAGAGATTGGAGAAAAGTTCATGAATGGGAAGAGATCAAATAATGAGAATCATCAATTGGGAGTGTCAACAATGAAGATGAAGAAAATGAAAGGAAGAAGAAAAGTGAGAGAACCAAGATTCTCATTCAAGACCATGAGCGATGTTGATGTTCTTGATGATGGTTACAAATGGCGAAAATACGGACAGAAAGTGGTAAAAAACACACAACATCCTAGAAGCTATTATCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTAGAAAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCCCATGATTCTGAAGACTCTGAAGCTCAAACCCATCTCAATAATTTCTTTTGGTAA | 741 | 37.65 | MGSKSQVLLNPQALFEDHQDHEVAANSQMGFFNFPSNLTFFQLPSIPQTHSPSPPFDPPNFSISSNNTTNNNNNSNSNLNETLLSSSLLPLKPSLSYEFAPQHLLSLQTSTPNLWPWGEIGEKFMNGKRSNNENHQLGVSTMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFW | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1096902 | 1098858 | - | CcPI632755_02g000980.1 | Cco02g0098 | 170855 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0098 | 246 | Gene3D | WRKY domain | 156 | 222 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0098 | 246 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 50 | 232 | IPR044810 | GO:0003700(InterPro) | |
Cco02g0098 | 246 | FunFam | WRKY transcription factor 57 | 155 | 229 | - | - | |
Cco02g0098 | 246 | ProSiteProfiles | WRKY domain profile. | 164 | 229 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0098 | 246 | MobiDBLite | consensus disorder prediction | 45 | 79 | - | - | |
Cco02g0098 | 246 | SMART | WRKY_cls | 169 | 228 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0098 | 246 | Pfam | WRKY DNA -binding domain | 170 | 226 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0098 | 246 | SUPERFAMILY | WRKY DNA-binding domain | 161 | 228 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0098 | 246 | MobiDBLite | consensus disorder prediction | 60 | 79 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0098 | Cco-Chr2:1096902 | Cco04g1348 | Cco-Chr4:28833947 | 6.80E-47 | dispersed | |
Cco02g0098 | Cco-Chr2:1096902 | Cco02g0101 | Cco-Chr2:1161983 | 2.70E-19 | proximal | |
Cco05g0011 | Cco-Chr5:119245 | Cco02g0098 | Cco-Chr2:1096902 | 2.30E-32 | transposed | |
Cco02g0098 | Cco-Chr2:1096902 | Cco04g1355 | Cco-Chr4:28936246 | 3.50E-19 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58679 | PF03106 | WRKY | 4.20E-24 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0098 | - | - | - | 0.0 |