Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0098 ATGGGTTCTAAATCCCAAGTCCTATTGAACCCACAAGCTTTGTTTGAAGATCATCAAGATCATGAAGTGGCAGCAAATTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACTTAACTTTTTTCCAACTTCCTTCAATTCCTCAAACCCATTCTCCTTCCCCTCCATTTGATCCTCCAAATTTCTCCATTTCTAGTAATAATACTACTAATAATAATAATAATAGTAATTCCAATCTCAATGAAACCCTACTTTCTTCTTCTCTTTTGCCCCTCAAGCCCTCCCTTTCCTATGAATTTGCACCTCAACACCTCCTTTCCTTGCAAACATCCACTCCAAATCTATGGCCATGGGGAGAGATTGGAGAAAAGTTCATGAATGGGAAGAGATCAAATAATGAGAATCATCAATTGGGAGTGTCAACAATGAAGATGAAGAAAATGAAAGGAAGAAGAAAAGTGAGAGAACCAAGATTCTCATTCAAGACCATGAGCGATGTTGATGTTCTTGATGATGGTTACAAATGGCGAAAATACGGACAGAAAGTGGTAAAAAACACACAACATCCTAGAAGCTATTATCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTAGAAAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCCCATGATTCTGAAGACTCTGAAGCTCAAACCCATCTCAATAATTTCTTTTGGTAA 741 37.65 MGSKSQVLLNPQALFEDHQDHEVAANSQMGFFNFPSNLTFFQLPSIPQTHSPSPPFDPPNFSISSNNTTNNNNNSNSNLNETLLSSSLLPLKPSLSYEFAPQHLLSLQTSTPNLWPWGEIGEKFMNGKRSNNENHQLGVSTMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFW 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1096902 1098858 - CcPI632755_02g000980.1 Cco02g0098 170855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0098 246 Gene3D WRKY domain 156 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0098 246 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 50 232 IPR044810 GO:0003700(InterPro)
Cco02g0098 246 FunFam WRKY transcription factor 57 155 229 - -
Cco02g0098 246 ProSiteProfiles WRKY domain profile. 164 229 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0098 246 MobiDBLite consensus disorder prediction 45 79 - -
Cco02g0098 246 SMART WRKY_cls 169 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0098 246 Pfam WRKY DNA -binding domain 170 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0098 246 SUPERFAMILY WRKY DNA-binding domain 161 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0098 246 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0098 Cco-Chr2:1096902 Cco04g1348 Cco-Chr4:28833947 6.80E-47 dispersed
Cco02g0098 Cco-Chr2:1096902 Cco02g0101 Cco-Chr2:1161983 2.70E-19 proximal
Cco05g0011 Cco-Chr5:119245 Cco02g0098 Cco-Chr2:1096902 2.30E-32 transposed
Cco02g0098 Cco-Chr2:1096902 Cco04g1355 Cco-Chr4:28936246 3.50E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58679 PF03106 WRKY 4.20E-24 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0098 - - - 0.0