Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0116 ATGGCTTCTTCAAATCCCATCTCTCTTCTCACATTTCTCACTTTCCTCTTCCTCCTCTCTTCTTCATCTTCCGCTGTCGTTCCAACCGCAGAGATTTGCCAATCCACCGCCTCCCCGTCCTTCTGCAACTCTTTCCTTCCCAACTCCCCGGCCTCGGTCCACTCCCATTGTCGCTTCACTCTCCGCAATGCCCTCCACCACGCACATGCCTTCTTGGCACTCGTCGACTCTCACCTCAGCCTTTTCCCCTCCCTCTCCGCCCTCCACGACTGCCATGGCCTCGCGGAAGCCAACCTCGACTTCATATCCCAAACTTTTTCCATAGTCAACTCCACAGCCATGGTCCTTCCTTATTACCAAGCCCATGAGATGGTGTCCTTAATGAGTGCAATGATCACCAATGAAGACACTTGTTATGACGGGTTGACGGGTTTAGGCTCGGCCTTGGGCTTGGTTGATAAGGTGTTGGAGGCCATCTCTTTTGATAGAAAGCTATATAGTTTGTACCTTTCGTTGTTCAAAATGGGTTGGGTTTCTGAGGACATGAAGGCTCCTATGTTGCCAAATATGAACCATTTTGGGGTCGGGAAAGGGCAGTTGAAGCTTAAAATGTCGCCCAAAGACCAAGCGTATTATGAGCGCTTGGTGCATAGGAAGAAGCCGGCGGCCGCTAGAAGGCTTCTTCAGACCAATTACCAAGATGATGGAATTTTAATCAATGGCATGGTTGCAGTGGATCAAAATGGAGCATACGATTTTACAACCATCAGCGACGCCATTGCGGCCGCTCCGAACAAGTCAGCTGTCGCTGACGGATACTTCTTGATCTTCGTGACTGCTGGGATTTACAATGAGAGTGTGGTGGTCCCAAAATATAAAAGGTATGTGTTGATGATCGGAGAAGGTAACAACCAAACTATCATCACTGGCAACAAAAACGTCATTGATGGTTCCACCACTTTCAATAGCGCAACCGTTGTTGTGGAGGGAACAGGGTTTCTCGGAGTAAACCTAACGATCAGCAACACGGCCGGCGCCGCCAAACACCAAGCGGTGGCATTGCGAGTAAGTGCCGACAATGTGACATTATATAGTTGTATATTCGAAGGCTATCAAGACACTCTCTACACACACTCCCTCCGTCAATTCTATAGAGAATGTGATATCTATGGTACCGTCGACTTCATCTTCGGCAATGCTGCCGTCGTTTTGCAAAACTGTAACCTCTACGCCCGTCTCCCAATGAGTGGCCAGTTCAACGCCCTCACGGCGCAGGGCCGAACCGACCCAAATCAGAACACCGGAACCTCCATCCACAACTGCACCATCAAGCCGACGTCGGAGCTCGCCGCGAGCCCCGCCACGAAGAGCTACTTAGGGCGGCCGTGGAAGGAATATTCTCGGACAATTTACATGCAATCGTTTATTGATTCCTTTATTGATCCTACAGGCTGGAAGGAGTGGGATGGCACTTTGAATTTAAACACTTCATATTACGCCGAGTTCAATAACTCAGGGCCGGGCTCCGACACTTCACGGCGGGCTTCATGGGTGGTCGGTGTCATCAACGCCACTGTTGCTAGTAACTTCACAGTGTCTCAATTCTTGGCCGGGGATCAATGGCTACCGCCTACCGCCGTGCCCTACACCGGTGGTTTGATATCATAA 1668 50.3 MASSNPISLLTFLTFLFLLSSSSSAVVPTAEICQSTASPSFCNSFLPNSPASVHSHCRFTLRNALHHAHAFLALVDSHLSLFPSLSALHDCHGLAEANLDFISQTFSIVNSTAMVLPYYQAHEMVSLMSAMITNEDTCYDGLTGLGSALGLVDKVLEAISFDRKLYSLYLSLFKMGWVSEDMKAPMLPNMNHFGVGKGQLKLKMSPKDQAYYERLVHRKKPAAARRLLQTNYQDDGILINGMVAVDQNGAYDFTTISDAIAAAPNKSAVADGYFLIFVTAGIYNESVVVPKYKRYVLMIGEGNNQTIITGNKNVIDGSTTFNSATVVVEGTGFLGVNLTISNTAGAAKHQAVALRVSADNVTLYSCIFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNLYARLPMSGQFNALTAQGRTDPNQNTGTSIHNCTIKPTSELAASPATKSYLGRPWKEYSRTIYMQSFIDSFIDPTGWKEWDGTLNLNTSYYAEFNNSGPGSDTSRRASWVVGVINATVASNFTVSQFLAGDQWLPPTAVPYTGGLIS 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1292958 1296312 + CcPI632755_02g001160.1 Cco02g0116 170873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0116 555 FunFam Pectinesterase 238 553 - -
Cco02g0116 555 CDD PMEI-like_3 32 177 - -
Cco02g0116 555 Gene3D - 241 555 IPR012334 -
Cco02g0116 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 175 IPR035513 -
Cco02g0116 555 SUPERFAMILY Pectin lyase-like 240 552 IPR011050 -
Cco02g0116 555 SMART PMEI_2 22 172 IPR006501 GO:0004857(InterPro)
Cco02g0116 555 PANTHER PECTINESTERASE 13 544 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco02g0116 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 175 IPR035513 -
Cco02g0116 555 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Cco02g0116 555 Pfam Plant invertase/pectin methylesterase inhibitor 31 167 IPR006501 GO:0004857(InterPro)
Cco02g0116 555 Pfam Pectinesterase 243 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0116 Cco-Chr2:1292958 Cco05g2471 Cco-Chr5:33141794 4.80E-125 dispersed
Cco02g0116 Cco-Chr2:1292958 Cco09g0539 Cco-Chr9:4706801 3.00E-159 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0116 K01051 - csv:101216984 937.947